Information for 6-CTCATTGCTT (Motif 9)

A T G C C G A T G T A C G T C A A C G T A C G T T C A G T A G C A G C T A C G T
Reverse Opposite:
G T C A C T G A A T C G A G T C C G T A T G C A A C G T A C T G C G T A T A C G
p-value:1e-8
log p-value:-2.039e+01
Information Content per bp:1.842
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.52%
Number of Background Sequences with motif219.2
Percentage of Background Sequences with motif0.45%
Average Position of motif in Targets51.8 +/- 27.6bp
Average Position of motif in Background49.1 +/- 25.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0005.1_Barhl1/Jaspar

Match Rank:1
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CTCATTGCTT---
GNNTTAATTGGTTGTT
 A C G T A C G T A C G T A T G C C G A T G T A C G T C A A C G T A C G T T C A G T A G C A G C T A C G T A C G T A C G T A C G T
C A T G G C T A T G C A G A C T C G A T C G T A C G T A C G A T A G C T C T A G T A C G G A C T A G C T C A T G G A C T C A G T

NFYB/MA0502.1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CTCATTGCTT-----
CTGATTGGTCNATTT
 A T G C C G A T G T A C G T C A A C G T A C G T T C A G T A G C A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

PH0006.1_Barhl2/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CTCATTGCTT---
NNNTTAATTGGTTTTT
 A C G T A C G T A C G T A T G C C G A T G T A C G T C A A C G T A C G T T C A G T A G C A G C T A C G T A C G T A C G T A C G T
C G A T C G A T T A G C G A C T C G A T C G T A C G T A C G A T G A C T C T A G C T A G A G C T G A C T C A G T C A G T C A G T

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:4
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CTCATTGCTT-
-TAATTGATTA
 A T G C C G A T G T A C G T C A A C G T A C G T T C A G T A G C A G C T A C G T A C G T
A C G T C G A T T C G A C G T A A G C T A C G T C T A G C T G A A C G T A G C T G C T A

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:5
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CTCATTGCTT---
---ATTGATTYND
 A T G C C G A T G T A C G T C A A C G T A C G T T C A G T A G C A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T

GBX2/MA0890.1/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CTCATTGCTT
NNTAATTGNN-
 A C G T A T G C C G A T G T A C G T C A A C G T A C G T T C A G T A G C A G C T A C G T
T A C G A G T C C G A T T G C A T G C A A C G T A G C T C T A G T A C G A G C T A C G T

Hmx1/MA0896.1/Jaspar

Match Rank:7
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----CTCATTGCTT--
ANNCATTAATTGCTNGN
 A C G T A C G T A C G T A C G T A C G T A T G C C G A T G T A C G T C A A C G T A C G T T C A G T A G C A G C T A C G T A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:8
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----CTCATTGCTT--
ANNCATTAATTGCTNGN
 A C G T A C G T A C G T A C G T A C G T A T G C C G A T G T A C G T C A A C G T A C G T T C A G T A G C A G C T A C G T A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:9
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTCATTGCTT
CCGATTGGCT
 A T G C C G A T G T A C G T C A A C G T A C G T T C A G T A G C A G C T A C G T
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

EN2/MA0642.1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTCATTGCTT
GNTAATTGGN-
 A C G T A T G C C G A T G T A C G T C A A C G T A C G T T C A G T A G C A G C T A C G T
T A C G A T G C A G C T T C G A C G T A A C G T A C G T T C A G T A C G A T C G A C G T