Information for 4-GCAAAAGTCA (Motif 4)

T A C G G A T C G C T A C G T A G T C A C T G A A T C G C A G T G T A C C G T A
Reverse Opposite:
G A C T C A T G G T C A T A G C G A C T C A G T G C A T C G A T C T A G A T G C
p-value:1e-11
log p-value:-2.629e+01
Information Content per bp:1.649
Number of Target Sequences with motif120.0
Percentage of Target Sequences with motif15.09%
Number of Background Sequences with motif3789.8
Percentage of Background Sequences with motif7.79%
Average Position of motif in Targets46.6 +/- 27.2bp
Average Position of motif in Background49.8 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e1/MA0676.1/Jaspar

Match Rank:1
Score:0.84
Offset:2
Orientation:forward strand
Alignment:GCAAAAGTCA-
--AAAAGTCAA
 T A C G G A T C G C T A C G T A G T C A C T G A A T C G C A G T G T A C C G T A A C G T
A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:2
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--GCAAAAGTCA
ANGNAAAGGTCA
 A C G T A C G T T A C G G A T C G C T A C G T A G T C A C T G A A T C G C A G T G T A C C G T A
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

PB0053.1_Rara_1/Jaspar

Match Rank:3
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--GCAAAAGTCA----
TCTCAAAGGTCACCTG
 A C G T A C G T T A C G G A T C G C T A C G T A G T C A C T G A A T C G C A G T G T A C C G T A A C G T A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

PB0049.1_Nr2f2_1/Jaspar

Match Rank:4
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--GCAAAAGTCA----
TCTCAAAGGTCACGAG
 A C G T A C G T T A C G G A T C G C T A C G T A G T C A C T G A A T C G C A G T G T A C C G T A A C G T A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.72
Offset:1
Orientation:forward strand
Alignment:GCAAAAGTCA-
-CAAAGGTCAG
 T A C G G A T C G C T A C G T A G T C A C T G A A T C G C A G T G T A C C G T A A C G T
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----GCAAAAGTCA
TAGGGCAAAGGTCA
 A C G T A C G T A C G T A C G T T A C G G A T C G C T A C G T A G T C A C T G A A T C G C A G T G T A C C G T A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----GCAAAAGTCA
TGGGGCAAAGGTCA
 A C G T A C G T A C G T A C G T T A C G G A T C G C T A C G T A G T C A C T G A A T C G C A G T G T A C C G T A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:8
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----GCAAAAGTCA
GTAGGGCAAAGGTCA
 A C G T A C G T A C G T A C G T A C G T T A C G G A T C G C T A C G T A G T C A C T G A A T C G C A G T G T A C C G T A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

NR2F1/MA0017.2/Jaspar

Match Rank:9
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GCAAAAGTCA----
-CAAAGGTCAAGGG
 T A C G G A T C G C T A C G T A G T C A C T G A A T C G C A G T G T A C C G T A A C G T A C G T A C G T A C G T
A C G T G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

Nr2f6/MA0677.1/Jaspar

Match Rank:10
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GCAAAAGTCA
GAGGTCAAAGGTCA
 A C G T A C G T A C G T A C G T T A C G G A T C G C T A C G T A G T C A C T G A A T C G C A G T G T A C C G T A
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A