Information for 9-TTTGAATTTCGTT (Motif 12)

A C G T A C G T A C G T C T A G C G T A C G T A A C G T A C G T A C G T A G T C A C T G A C G T A C G T
Reverse Opposite:
C G T A C G T A G T A C A C T G C G T A C G T A G T C A A C G T A C G T A G T C C G T A C G T A C G T A
p-value:1e-8
log p-value:-1.966e+01
Information Content per bp:1.924
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.8 +/- 29.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TTTGAATTTCGTT
ATTTGAATT-----
 A C G T A C G T A C G T A C G T C T A G C G T A C G T A A C G T A C G T A C G T A G T C A C T G A C G T A C G T
C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T A C G T A C G T A C G T

PB0169.1_Sox15_2/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TTTGAATTTCGTT---
-TNGAATTTCATTNAN
 A C G T A C G T A C G T C T A G C G T A C G T A A C G T A C G T A C G T A G T C A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A G C T A T G C C T A G C T G A G T C A G A C T C A G T G C A T T G A C C T G A C A G T G A C T A G T C T G C A T G C A

IRF9/MA0653.1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TTTGAATTTCGTT
AGTTTCGGTTTCGTT
 A C G T A C G T A C G T A C G T A C G T C T A G C G T A C G T A A C G T A C G T A C G T A G T C A C T G A C G T A C G T
C T G A A T C G C G A T C G A T A C G T G A T C C T A G A T C G C A G T C G A T A C G T G A T C C T A G C G A T C G A T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TTTGAATTTCGTT
TTTGAAACCG---
 A C G T A C G T A C G T C T A G C G T A C G T A A C G T A C G T A C G T A G T C A C T G A C G T A C G T
A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G A C G T A C G T A C G T

IRF7/MA0772.1/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TTTGAATTTCGTT
ANTTTCGCTTTCGN-
 A C G T A C G T A C G T A C G T A C G T C T A G C G T A C G T A A C G T A C G T A C G T A G T C A C T G A C G T A C G T
C G T A A G T C C G A T A C G T C A G T G A T C C T A G A G T C A C G T C G A T A C G T T G A C A C T G C A G T A C G T

IRF1/MA0050.2/Jaspar

Match Rank:6
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------TTTGAATTTCGTT--
TTTTACTTTCACTTTCACTTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G C G T A C G T A A C G T A C G T A C G T A G T C A C T G A C G T A C G T A C G T A C G T
G A C T A G C T A G C T A G C T C T G A A T G C C G A T A G C T A G C T A G T C C T G A A T G C G C A T G A C T G A C T A G T C C G T A A G T C G A C T G C A T G A C T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:7
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TTTGAATTTCGTT
ACTTTCACTTTC---
 A C G T A C G T A C G T A C G T A C G T C T A G C G T A C G T A A C G T A C G T A C G T A G T C A C T G A C G T A C G T
C T G A A T G C G A C T C G A T A G C T A G T C C G T A A T G C A C G T A C G T G A C T A G T C A C G T A C G T A C G T

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TTTGAATTTCGTT
AGTTTCAGTTTC---
 A C G T A C G T A C G T A C G T A C G T C T A G C G T A C G T A A C G T A C G T A C G T A G T C A C T G A C G T A C G T
C T G A A T C G A G C T A G C T A C G T T A G C C T G A T A C G C G A T A C G T G A C T A G T C A C G T A C G T A C G T

PB0037.1_Isgf3g_1/Jaspar

Match Rank:9
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TTTGAATTTCGTT----
--TNAGTTTCGATTTTN
 A C G T A C G T A C G T C T A G C G T A C G T A A C G T A C G T A C G T A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T G C A T C T G A A T C G C G A T G C A T A C G T A G T C C T A G C G T A C G A T G C A T G A C T G A C T A C T G

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TTTGAATTTCGTT
CCTTTGATGT-----
 A C G T A C G T A C G T A C G T A C G T C T A G C G T A C G T A A C G T A C G T A C G T A G T C A C T G A C G T A C G T
A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T A C G T A C G T A C G T A C G T A C G T