Information for 6-CCAATAAATC (Motif 7)

A T G C G T A C C G T A C G T A A C G T C G T A C G T A C G T A A G C T A G T C
Reverse Opposite:
A C T G T C G A A C G T A C G T C G A T G T C A C G A T C G A T A C T G A T C G
p-value:1e-11
log p-value:-2.588e+01
Information Content per bp:1.855
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.58%
Number of Background Sequences with motif48.9
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets60.6 +/- 30.6bp
Average Position of motif in Background45.2 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13/MA0901.1/Jaspar

Match Rank:1
Score:0.84
Offset:0
Orientation:forward strand
Alignment:CCAATAAATC
CCAATAAAAC
 A T G C G T A C C G T A C G T A A C G T C G T A C G T A C G T A A G C T A G T C
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

Hoxc9/MA0485.1/Jaspar

Match Rank:2
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-CCAATAAATC--
GGCCATAAATCAC
 A C G T A T G C G T A C C G T A C G T A A C G T C G T A C G T A C G T A A G C T A G T C A C G T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

HOXA13/MA0650.1/Jaspar

Match Rank:3
Score:0.82
Offset:0
Orientation:forward strand
Alignment:CCAATAAATC
CCAATAAAAA
 A T G C G T A C C G T A C G T A A C G T C G T A C G T A C G T A A G C T A G T C
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

Hoxa9/MA0594.1/Jaspar

Match Rank:4
Score:0.81
Offset:0
Orientation:forward strand
Alignment:CCAATAAATC-
GCCATAAATCA
 A T G C G T A C C G T A C G T A A C G T C G T A C G T A C G T A A G C T A G T C A C G T
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:5
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-CCAATAAATC-
GGCCATAAATCA
 A C G T A T G C G T A C C G T A C G T A A C G T C G T A C G T A C G T A A G C T A G T C A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:6
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-CCAATAAATC-
GGCCATAAATCA
 A C G T A T G C G T A C C G T A C G T A A C G T C G T A C G T A C G T A A G C T A G T C A C G T
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

HOXD13/MA0909.1/Jaspar

Match Rank:7
Score:0.78
Offset:0
Orientation:forward strand
Alignment:CCAATAAATC
CCAATAAAAA
 A T G C G T A C C G T A C G T A A C G T C G T A C G T A C G T A A G C T A G T C
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:8
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-CCAATAAATC
CCYMATAAAA-
 A C G T A T G C G T A C C G T A C G T A A C G T C G T A C G T A C G T A A G C T A G T C
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-CCAATAAATC
NCYAATAAAA-
 A C G T A T G C G T A C C G T A C G T A A C G T C G T A C G T A C G T A A G C T A G T C
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:10
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---CCAATAAATC---
CTACCAATAAAATTCT
 A C G T A C G T A C G T A T G C G T A C C G T A C G T A A C G T C G T A C G T A C G T A A G C T A G T C A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T