Information for 1-STTTTATRGS (Motif 1)

T A C G C G A T A C G T A C G T C G A T C T G A A G C T C T A G C T A G A T G C
Reverse Opposite:
T A C G G A T C G A T C C T G A A G C T C G T A C G T A G T C A G C T A A T G C
p-value:1e-76
log p-value:-1.761e+02
Information Content per bp:1.691
Number of Target Sequences with motif275.0
Percentage of Target Sequences with motif34.55%
Number of Background Sequences with motif4813.8
Percentage of Background Sequences with motif10.10%
Average Position of motif in Targets52.9 +/- 25.1bp
Average Position of motif in Background50.4 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:STTTTATRGS-
-TTTTATTRGN
 T A C G C G A T A C G T A C G T C G A T C T G A A G C T C T A G C T A G A T G C A C G T
A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

HOXD13/MA0909.1/Jaspar

Match Rank:2
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:STTTTATRGS
NTTTTATTGG
 T A C G C G A T A C G T A C G T C G A T C T G A A G C T C T A G C T A G A T G C
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:3
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-STTTTATRGS-
DGWTTTATGRCN
 A C G T T A C G C G A T A C G T A C G T C G A T C T G A A G C T C T A G C T A G A T G C A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

CDX1/MA0878.1/Jaspar

Match Rank:4
Score:0.93
Offset:1
Orientation:reverse strand
Alignment:STTTTATRGS
-TTTTATTGC
 T A C G C G A T A C G T A C G T C G A T C T G A A G C T C T A G C T A G A T G C
A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:5
Score:0.93
Offset:1
Orientation:forward strand
Alignment:STTTTATRGS-
-TTTTATKRGG
 T A C G C G A T A C G T A C G T C G A T C T G A A G C T C T A G C T A G A T G C A C G T
A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:STTTTATRGS
NTTTTATGAC
 T A C G C G A T A C G T A C G T C G A T C T G A A G C T C T A G C T A G A T G C
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

CDX2/MA0465.1/Jaspar

Match Rank:7
Score:0.92
Offset:1
Orientation:reverse strand
Alignment:STTTTATRGS--
-TTTTATGGCTN
 T A C G C G A T A C G T A C G T C G A T C T G A A G C T C T A G C T A G A T G C A C G T A C G T
A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

HOXB13/MA0901.1/Jaspar

Match Rank:8
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:STTTTATRGS
NTTTTATTGG
 T A C G C G A T A C G T A C G T C G A T C T G A A G C T C T A G C T A G A T G C
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G

HOXA13/MA0650.1/Jaspar

Match Rank:9
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:STTTTATRGS
TTTTTATTGG
 T A C G C G A T A C G T A C G T C G A T C T G A A G C T C T A G C T A G A T G C
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G

HOXA10/MA0899.1/Jaspar

Match Rank:10
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:STTTTATRGS-
NTTTTATTACN
 T A C G C G A T A C G T A C G T C G A T C T G A A G C T C T A G C T A G A T G C A C G T
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C