Information for 4-GGCCATTGAT (Motif 10)

A C T G A C T G A G T C A G T C C G T A A C G T A C G T A C T G C G T A A C G T
Reverse Opposite:
C G T A A C G T A G T C C G T A C G T A A C G T A C T G A C T G A G T C A G T C
p-value:1e-2
log p-value:-6.748e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif3.57%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets7.0 +/- 0.0bp
Average Position of motif in Background56.6 +/- 40.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:1
Score:0.74
Offset:4
Orientation:reverse strand
Alignment:GGCCATTGAT----
----ATTGATTYND
 A C T G A C T G A G T C A G T C C G T A A C G T A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T

SOX9/MA0077.1/Jaspar

Match Rank:2
Score:0.73
Offset:2
Orientation:forward strand
Alignment:GGCCATTGAT-
--CCATTGTTC
 A C T G A C T G A G T C A G T C C G T A A C G T A C G T A C T G C G T A A C G T A C G T
A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.70
Offset:2
Orientation:forward strand
Alignment:GGCCATTGAT--
--CCATTGTTYB
 A C T G A C T G A G T C A G T C C G T A A C G T A C G T A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GGCCATTGAT-
-NCCATTGTTC
 A C T G A C T G A G T C A G T C C G T A A C G T A C G T A C T G C G T A A C G T A C G T
A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GGCCATTGAT
ACTAGCCAATCA-
 A C G T A C G T A C G T A C T G A C T G A G T C A G T C C G T A A C G T A C G T A C T G C G T A A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GGCCATTGAT
GGCCATTAAC
 A C T G A C T G A G T C A G T C C G T A A C G T A C G T A C T G C G T A A C G T
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:7
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GGCCATTGAT--
RGCCATYAATCA
 A C T G A C T G A G T C A G T C C G T A A C G T A C G T A C T G C G T A A C G T A C G T A C G T
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:8
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GGCCATTGAT----
NNANTGATTGATNNNN
 A C G T A C G T A C T G A C T G A G T C A G T C C G T A A C G T A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G C A T C G A T T G C A T A C G G A C T C T A G G T C A G A C T C G A T T C A G C G T A C G A T A T G C A G C T G A C T A T G C

PB0144.1_Lef1_2/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GGCCATTGAT----
NNANTGATTGATNTTN
 A C G T A C G T A C T G A C T G A G T C A G T C C G T A A C G T A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G C A T C G T A T C G A C A T G G A C T C T A G G T C A G A C T C G A T T A C G C G T A C G A T A T G C A G C T G C A T A T G C

PB0040.1_Lef1_1/Jaspar

Match Rank:10
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GGCCATTGAT-----
AATCCCTTTGATCTATC
 A C G T A C G T A C T G A C T G A G T C A G T C C G T A A C G T A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C T G A C G A T A G T C A G T C A G T C G A C T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T T G A C