Information for 5-ATTGTAATATGCA (Motif 6)

C G T A A C G T A C G T C T A G A C G T C G T A C G T A A C G T G T C A A C G T A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C C G T A C A G T C G T A A C G T C G A T C G T A A G T C C G T A C G T A C G A T
p-value:1e-13
log p-value:-3.097e+01
Information Content per bp:1.937
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.8 +/- 19.3bp
Average Position of motif in Background40.2 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0079.1_Sry_1/Jaspar

Match Rank:1
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----ATTGTAATATGCA
TATAATTATAATATTC-
 A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A C G T C G T A C G T A A C G T G T C A A C G T A C T G A G T C C G T A
A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C A C G T

PB0064.1_Sox14_1/Jaspar

Match Rank:2
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----ATTGTAATATGCA
GCTAATTATAATTATC-
 A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A C G T C G T A C G T A A C G T G T C A A C G T A C T G A G T C C G T A
C A T G G A T C G A C T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C A G T G T A C A C G T

PB0174.1_Sox30_2/Jaspar

Match Rank:3
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----ATTGTAATATGCA
TAAGATTATAATACGG-
 A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A C G T C G T A C G T A A C G T G T C A A C G T A C T G A G T C C G T A
G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:ATTGTAATATGCA------
--TNNATTATGCATANNTT
 C G T A A C G T A C G T C T A G A C G T C G T A C G T A A C G T G T C A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:5
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:ATTGTAATATGCA-
--TGAATTATGCAT
 C G T A A C G T A C G T C T A G A C G T C G T A C G T A A C G T G T C A A C G T A C T G A G T C C G T A A C G T
A C G T A C G T C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T

PB0187.1_Tcf7_2/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---ATTGTAATATGCA
NNNTTTNTAATACNG-
 A C G T A C G T A C G T C G T A A C G T A C G T C T A G A C G T C G T A C G T A A C G T G T C A A C G T A C T G A G T C C G T A
C G A T C A G T C T A G C A G T C A G T C G A T T G C A A G C T G T C A C G T A C G A T C G T A G T A C T C A G C A T G A C G T

PB0069.1_Sox21_1/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----ATTGTAATATGCA
TTTAATTATAATTAAG-
 A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A C G T C G T A C G T A A C G T G T C A A C G T A C T G A G T C C G T A
G A C T G C A T G A C T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C A T G A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:ATTGTAATATGCA-----
--TNTAATTTGCATANNN
 C G T A A C G T A C G T C T A G A C G T C G T A C G T A A C G T G T C A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A

Pou2f3/MA0627.1/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:ATTGTAATATGCA-----
--TNTAATTTGCATACNA
 C G T A A C G T A C G T C T A G A C G T C G T A C G T A A C G T G T C A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:ATTGTAATATGCA-----
--TNTAATTTGCATACNA
 C G T A A C G T A C G T C T A G A C G T C G T A C G T A A C G T G T C A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A