Information for 3-GDTCAAAGTCCAV (Motif 3)

C A T G C T G A C G A T A G T C C G T A C G T A C G T A A C T G A C G T A G T C G T A C G T C A T C A G
Reverse Opposite:
A G T C C A G T C A T G T C A G T G C A A G T C A C G T A C G T A C G T C T A G G C T A G A C T G T A C
p-value:1e-24
log p-value:-5.670e+01
Information Content per bp:1.678
Number of Target Sequences with motif48.0
Percentage of Target Sequences with motif5.78%
Number of Background Sequences with motif391.9
Percentage of Background Sequences with motif0.81%
Average Position of motif in Targets50.7 +/- 26.9bp
Average Position of motif in Background50.9 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.92
Offset:-3
Orientation:forward strand
Alignment:---GDTCAAAGTCCAV
AGAGTCCAAAGTCCA-
 A C G T A C G T A C G T C A T G C T G A C G A T A G T C C G T A C G T A C G T A A C T G A C G T A G T C G T A C G T C A T C A G
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.92
Offset:-4
Orientation:forward strand
Alignment:----GDTCAAAGTCCAV
CANAGNNCAAAGTCCA-
 A C G T A C G T A C G T A C G T C A T G C T G A C G A T A G T C C G T A C G T A C G T A A C T G A C G T A G T C G T A C G T C A T C A G
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:3
Score:0.88
Offset:-2
Orientation:forward strand
Alignment:--GDTCAAAGTCCAV-
GGGGTCAAAGTCCAAT
 A C G T A C G T C A T G C T G A C G A T A G T C C G T A C G T A C G T A A C T G A C G T A G T C G T A C G T C A T C A G A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

RXRG/MA0856.1/Jaspar

Match Rank:4
Score:0.81
Offset:-2
Orientation:forward strand
Alignment:--GDTCAAAGTCCAV
GGGGTCAAAGGTCA-
 A C G T A C G T C A T G C T G A C G A T A G T C C G T A C G T A C G T A A C T G A C G T A G T C G T A C G T C A T C A G
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A A C G T

Rxra/MA0512.2/Jaspar

Match Rank:5
Score:0.81
Offset:-2
Orientation:forward strand
Alignment:--GDTCAAAGTCCAV
GGGGTCAAAGGTCA-
 A C G T A C G T C A T G C T G A C G A T A G T C C G T A C G T A C G T A A C T G A C G T A G T C G T A C G T C A T C A G
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.80
Offset:3
Orientation:forward strand
Alignment:GDTCAAAGTCCAV
---CAAAGGTCAG
 C A T G C T G A C G A T A G T C C G T A C G T A C G T A A C T G A C G T A G T C G T A C G T C A T C A G
A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

RXRB/MA0855.1/Jaspar

Match Rank:7
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--GDTCAAAGTCCAV
GGGGTCAAAGGTCA-
 A C G T A C G T C A T G C T G A C G A T A G T C C G T A C G T A C G T A A C T G A C G T A G T C G T A C G T C A T C A G
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A A C G T

Nr2f6/MA0677.1/Jaspar

Match Rank:8
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--GDTCAAAGTCCAV
GAGGTCAAAGGTCA-
 A C G T A C G T C A T G C T G A C G A T A G T C C G T A C G T A C G T A A C T G A C G T A G T C G T A C G T C A T C A G
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:9
Score:0.80
Offset:0
Orientation:forward strand
Alignment:GDTCAAAGTCCAV---
GGCAAAAGTCCAATAA
 C A T G C T G A C G A T A G T C C G T A C G T A C G T A A C T G A C G T A G T C G T A C G T C A T C A G A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:10
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--GDTCAAAGTCCAV
GAGGTCAAAGGTCA-
 A C G T A C G T C A T G C T G A C G A T A G T C C G T A C G T A C G T A A C T G A C G T A G T C G T A C G T C A T C A G
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T