Information for 12-AGGCTAKTAA (Motif 14)

C T G A C A T G T C A G G A T C A C G T C G T A C A T G C A G T C T G A C T G A
Reverse Opposite:
A G C T G A C T G T C A G T A C C G A T T G C A C T A G A G T C G T A C G A C T
p-value:1e-10
log p-value:-2.415e+01
Information Content per bp:1.663
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif17.2
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets54.7 +/- 25.3bp
Average Position of motif in Background44.6 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGGCTAKTAA
AAGGCAAGTGT
 A C G T C T G A C A T G T C A G G A T C A C G T C G T A C A T G C A G T C T G A C T G A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

PH0040.1_Hmbox1/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGGCTAKTAA-----
GAAAACTAGTTAACATC
 A C G T A C G T C T G A C A T G T C A G G A T C A C G T C G T A C A T G C A G T C T G A C T G A A C G T A C G T A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

HMBOX1/MA0895.1/Jaspar

Match Rank:3
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AGGCTAKTAA--
--ACTAGTTAAC
 C T G A C A T G T C A G G A T C A C G T C G T A C A T G C A G T C T G A C T G A A C G T A C G T
A C G T A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGGCTAKTAA-
-GGCCATTAAC
 C T G A C A T G T C A G G A T C A C G T C G T A C A T G C A G T C T G A C T G A A C G T
A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

PB0135.1_Hoxa3_2/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGGCTAKTAA--
AAAAACCATTAAGG
 A C G T A C G T C T G A C A T G T C A G G A T C A C G T C G T A C A T G C A G T C T G A C T G A A C G T A C G T
T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AGGCTAKTAA
AAGGATATNTN
 A C G T C T G A C A T G T C A G G A T C A C G T C G T A C A T G C A G T C T G A C T G A
T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

PH0168.1_Hnf1b/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AGGCTAKTAA------
ANNNCTAGTTAACNGNN
 A C G T C T G A C A T G T C A G G A T C A C G T C G T A C A T G C A G T C T G A C T G A A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

PH0073.1_Hoxc9/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AGGCTAKTAA----
GGAGGTCATTAATTAT
 A C G T A C G T C T G A C A T G T C A G G A T C A C G T C G T A C A T G C A G T C T G A C T G A A C G T A C G T A C G T A C G T
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

BARX1/MA0875.1/Jaspar

Match Rank:9
Score:0.55
Offset:2
Orientation:forward strand
Alignment:AGGCTAKTAA
--GCAATTAG
 C T G A C A T G T C A G G A T C A C G T C G T A C A T G C A G T C T G A C T G A
A C G T A C G T T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGGCTAKTAA
RGGATTAR---
 A C G T C T G A C A T G T C A G G A T C A C G T C G T A C A T G C A G T C T G A C T G A
T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T A C G T