Information for 3-TAAGCCGCCT (Motif 21)

A C G T T C G A C G T A A C T G A T G C G T A C A T C G A G T C G T A C A G C T
Reverse Opposite:
C T G A A C T G A C T G A T G C A C T G A T C G A G T C A C G T A G C T G T C A
p-value:1e-9
log p-value:-2.089e+01
Information Content per bp:1.859
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.85%
Number of Background Sequences with motif53.9
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets51.8 +/- 25.5bp
Average Position of motif in Background46.6 +/- 23.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PROX1/MA0794.1/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TAAGCCGCCT--
CAAGACGCCTTA
 A C G T T C G A C G T A A C T G A T G C G T A C A T C G A G T C G T A C A G C T A C G T A C G T
A G T C C T G A G C T A C T A G T C G A G A T C C A T G G A T C A G T C C A G T A G C T T C G A

Crx/MA0467.1/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TAAGCCGCCT
CTAATCCTCTT
 A C G T A C G T T C G A C G T A A C T G A T G C G T A C A T C G A G T C G T A C A G C T
G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

PH0126.1_Obox6/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TAAGCCGCCT--
CNATAATCCGNTTNT
 A C G T A C G T A C G T A C G T T C G A C G T A A C T G A T G C G T A C A T C G A G T C G T A C A G C T A C G T A C G T
T A G C C T G A G C T A C G A T C G T A C G T A A C G T G T A C A G T C A T C G G A C T C G A T G A C T C G A T C A G T

OTX1/MA0711.1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TAAGCCGCCT
TTAATCCG---
 A C G T A C G T T C G A C G T A A C T G A T G C G T A C A T C G A G T C G T A C A G C T
G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G A C G T A C G T A C G T

PH0015.1_Crx/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TAAGCCGCCT--
AGGCTAATCCCCAANG
 A C G T A C G T A C G T A C G T A C G T T C G A C G T A A C T G A T G C G T A C A T C G A G T C G T A C A G C T A C G T A C G T
G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G

PH0122.1_Obox2/Jaspar

Match Rank:6
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TAAGCCGCCT--
ATAGTTAATCCCCCTCA
 A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A A C T G A T G C G T A C A T C G A G T C G T A C A G C T A C G T A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G C T A C A G T G T A C A G T C G A T C G A T C G A T C A G C T T G A C G C T A

PH0139.1_Pitx3/Jaspar

Match Rank:7
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------TAAGCCGCCT
GNNAGCTAATCCCCCN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A A C T G A T G C G T A C A T C G A G T C G T A C A G C T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

RHOXF1/MA0719.1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TAAGCCGCCT
ATAATCCC---
 A C G T A C G T T C G A C G T A A C T G A T G C G T A C A T C G A G T C G T A C A G C T
G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TAAGCCGCCT
CCTAATCCGC--
 A C G T A C G T A C G T T C G A C G T A A C T G A T G C G T A C A T C G A G T C G T A C A G C T
T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TAAGCCGCCT
GCTAATCC----
 A C G T A C G T A C G T T C G A C G T A A C T G A T G C G T A C A T C G A G T C G T A C A G C T
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T