Information for 3-AGGAAGGTGAAAAATT (Motif 4)

C G T A A C T G T A C G C G T A G C T A C T A G C A T G C G A T A C T G C G T A T C G A C G T A G T C A T G C A C G A T C G A T
Reverse Opposite:
C G T A C G T A A C G T C A G T C G A T A G C T C G A T T G A C G C T A G A T C G A T C C A G T A C G T A T G C A G T C A C G T
p-value:1e-12
log p-value:-2.835e+01
Information Content per bp:1.713
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif2.22%
Number of Background Sequences with motif15.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets53.4 +/- 24.3bp
Average Position of motif in Background53.4 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

IRF2/MA0051.1/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGGAAGGTGAAAAATT---
-GGAAAGCGAAACCAAAAC
 C G T A A C T G T A C G C G T A G C T A C T A G C A T G C G A T A C T G C G T A T C G A C G T A G T C A T G C A C G A T C G A T A C G T A C G T A C G T
A C G T A T C G C T A G C G T A C G T A C G T A C T A G A G C T A C T G C G T A C G T A C G T A A T C G A G T C C T G A C G T A C G T A G C T A G T A C

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:2
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AGGAAGGTGAAAAATT
--GAAAGTGAAAGT--
 C G T A A C T G T A C G C G T A G C T A C T A G C A T G C G A T A C T G C G T A T C G A C G T A G T C A T G C A C G A T C G A T
A C G T A C G T T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T A C G T A C G T

EOMES/MA0800.1/Jaspar

Match Rank:3
Score:0.56
Offset:3
Orientation:forward strand
Alignment:AGGAAGGTGAAAAATT
---AAGGTGTGAAAAT
 C G T A A C T G T A C G C G T A G C T A C T A G C A T G C G A T A C T G C G T A T C G A C G T A G T C A T G C A C G A T C G A T
A C G T A C G T A C G T C T G A C T G A C T A G A C T G A G C T T C A G G A C T A C T G T C G A G C T A G T C A C G T A G A C T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:4
Score:0.56
Offset:3
Orientation:forward strand
Alignment:AGGAAGGTGAAAAATT
---AAGGTGTKAA---
 C G T A A C T G T A C G C G T A G C T A C T A G C A T G C G A T A C T G C G T A T C G A C G T A G T C A T G C A C G A T C G A T
A C G T A C G T A C G T C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T A C G T A C G T

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:AGGAAGGTGAAAAATT
--GAAACTGAAACT--
 C G T A A C T G T A C G C G T A G C T A C T A G C A T G C G A T A C T G C G T A T C G A C G T A G T C A T G C A C G A T C G A T
A C G T A C G T T C A G C T G A G T C A C G T A A T G C G A C T A T C G G T C A C T G A C T G A T A G C G A C T A C G T A C G T

PB0013.1_Eomes_1/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGGAAGGTGAAAAATT-
GAAAAGGTGTGAAAATT
 C G T A A C T G T A C G C G T A G C T A C T A G C A T G C G A T A C T G C G T A T C G A C G T A G T C A T G C A C G A T C G A T A C G T
A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:7
Score:0.55
Offset:4
Orientation:forward strand
Alignment:AGGAAGGTGAAAAATT
----AGGTGTGAAM--
 C G T A A C T G T A C G C G T A G C T A C T A G C A T G C G A T A C T G C G T A T C G A C G T A G T C A T G C A C G A T C G A T
A C G T A C G T A C G T A C G T C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A A C G T A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AGGAAGGTGAAAAATT
GGAGAAAGGTGCGA----
 A C G T A C G T C G T A A C T G T A C G C G T A G C T A C T A G C A T G C G A T A C T G C G T A T C G A C G T A G T C A T G C A C G A T C G A T
C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A A C G T A C G T A C G T A C G T

TBX2/MA0688.1/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:AGGAAGGTGAAAAATT
---AAGGTGTGAAA--
 C G T A A C T G T A C G C G T A G C T A C T A G C A T G C G A T A C T G C G T A T C G A C G T A G T C A T G C A C G A T C G A T
A C G T A C G T A C G T C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A A C G T A C G T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:10
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:AGGAAGGTGAAAAATT
-----AATGGAAAAT-
 C G T A A C T G T A C G C G T A G C T A C T A G C A T G C G A T A C T G C G T A T C G A C G T A G T C A T G C A C G A T C G A T
A C G T A C G T A C G T A C G T A C G T T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T A C G T