Information for 2-AGAGCGTGCC (Motif 9)

C G T A A C T G C G T A T C A G A G T C T C A G A C G T A C T G A G T C A T G C
Reverse Opposite:
A T C G C T A G T G A C C G T A A G T C C T A G A G T C C G A T A G T C C G A T
p-value:1e-10
log p-value:-2.503e+01
Information Content per bp:1.839
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.38%
Number of Background Sequences with motif100.1
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets57.2 +/- 27.0bp
Average Position of motif in Background50.6 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AGAGCGTGCC-
-TTGCGTGCVA
 C G T A A C T G C G T A T C A G A G T C T C A G A C G T A C T G A G T C A T G C A C G T
A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:2
Score:0.66
Offset:2
Orientation:forward strand
Alignment:AGAGCGTGCC
--TGCGTG--
 C G T A A C T G C G T A T C A G A G T C T C A G A C G T A C T G A G T C A T G C
A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T

Hes1/MA1099.1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGAGCGTGCC
NNCGCGTGNN
 C G T A A C T G C G T A T C A G A G T C T C A G A C G T A C T G A G T C A T G C
C A T G C T G A T G A C C T A G A G T C T C A G G A C T C T A G A T G C A T G C

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AGAGCGTGCC
-GGACGTGC-
 C G T A A C T G C G T A T C A G A G T C T C A G A C G T A C T G A G T C A T G C
A C G T T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T

POL006.1_BREu/Jaspar

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AGAGCGTGCC
--AGCGCGCC
 C G T A A C T G C G T A T C A G A G T C T C A G A C G T A C T G A G T C A T G C
A C G T A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C

PB0130.1_Gm397_2/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AGAGCGTGCC---
NNGCGTGTGTGCNGCN
 A C G T A C G T A C G T C G T A A C T G C G T A T C A G A G T C T C A G A C G T A C T G A G T C A T G C A C G T A C G T A C G T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

Klf12/MA0742.1/Jaspar

Match Rank:7
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----AGAGCGTGCC-
NANAAGGGCGTGGTC
 A C G T A C G T A C G T A C G T C G T A A C T G C G T A T C A G A G T C T C A G A C G T A C T G A G T C A T G C A C G T
C G T A C G T A C G A T C G T A C G T A C T A G T C A G C T A G G A T C C A T G A C G T A T C G C A T G A G C T G T A C

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AGAGCGTGCC
-RTACGTGC-
 C G T A A C T G C G T A T C A G A G T C T C A G A C G T A C T G A G T C A T G C
A C G T C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----AGAGCGTGCC
TCAGNGAGCGTGAC
 A C G T A C G T A C G T A C G T C G T A A C T G C G T A T C A G A G T C T C A G A C G T A C T G A G T C A T G C
A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C

PB0180.1_Sp4_2/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGAGCGTGCC---
CAAAGGCGTGGCCAG
 A C G T A C G T C G T A A C T G C G T A T C A G A G T C T C A G A C G T A C T G A G T C A T G C A C G T A C G T A C G T
A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G