Information for 18-CACGGGTTCCTGC (Motif 34)

A G T C C G T A A G T C A C T G A C T G A C T G A C G T A C G T A G T C A G T C A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A A C T G A C T G C G T A C G T A A G T C A G T C A G T C A C T G A C G T A C T G
p-value:1e-5
log p-value:-1.270e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.48%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets30.7 +/- 9.2bp
Average Position of motif in Background38.7 +/- 14.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CLOCK/MA0819.1/Jaspar

Match Rank:1
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CACGGGTTCCTGC
AACACGTGTT-----
 A C G T A C G T A G T C C G T A A G T C A C T G A C T G A C T G A C G T A C G T A G T C A G T C A C G T A C T G A G T C
C T G A T C G A T G A C T C G A A G T C C T A G A G C T A C T G A G C T G A C T A C G T A C G T A C G T A C G T A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:2
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CACGGGTTCCTGC-
----ACATCCTGNT
 A G T C C G T A A G T C A C T G A C T G A C T G A C G T A C G T A G T C A G T C A C G T A C T G A G T C A C G T
A C G T A C G T A C G T A C G T C T G A A T G C C G T A A C G T A G T C A G T C A C G T A C T G A T C G G C A T

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:3
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CACGGGTTCCTGC-
----ATTTCCTGTN
 A G T C C G T A A G T C A C T G A C T G A C T G A C G T A C G T A G T C A G T C A C G T A C T G A G T C A C G T
A C G T A C G T A C G T A C G T C T G A A G C T A C G T A C G T A G T C A G T C A C G T A C T G G A C T A C G T

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)

Match Rank:4
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CACGGGTTCCTGC-
--NNAYTTCCTGHN
 A G T C C G T A A G T C A C T G A C T G A C T G A C G T A C G T A G T C A G T C A C G T A C T G A G T C A C G T
A C G T A C G T A T G C A G T C C T G A A G T C C G A T A C G T A G T C A G T C A C G T A T C G G A C T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CACGGGTTCCTGC
GTCATGCHTGRCTGS
 A C G T A C G T A G T C C G T A A G T C A C T G A C T G A C T G A C G T A C G T A G T C A G T C A C G T A C T G A G T C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:6
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CACGGGTTCCTGC
---CACTTCCTGT
 A G T C C G T A A G T C A C T G A C T G A C T G A C G T A C G T A G T C A G T C A C G T A C T G A G T C
A C G T A C G T A C G T A G T C T C G A A G T C C G A T A C G T A G T C A G T C A C G T A T C G A G C T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CACGGGTTCCTGC
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T A G T C C G T A A G T C A C T G A C T G A C T G A C G T A C G T A G T C A G T C A C G T A C T G A G T C
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

PB0043.1_Max_1/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CACGGGTTCCTGC
TGACCACGTGGTCGGG-
 A C G T A C G T A C G T A C G T A G T C C G T A A G T C A C T G A C T G A C T G A C G T A C G T A G T C A G T C A C G T A C T G A G T C
C A G T C A T G T G C A T A G C G T A C C T G A A G T C T C A G G A C T A C T G A T C G A C G T A T G C T C A G C A T G C A T G A C G T

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:9
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:CACGGGTTCCTGC---
------TTCCCGCCWG
 A G T C C G T A A G T C A C T G A C T G A C T G A C G T A C G T A G T C A G T C A C G T A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A T G C A T G C A G T C A C T G A G T C A T G C G C T A A T C G

Mlxip/MA0622.1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CACGGGTTCCTGC
GCACGTGT------
 A C G T A G T C C G T A A G T C A C T G A C T G A C T G A C G T A C G T A G T C A G T C A C G T A C T G A G T C
A C T G A G T C C G T A A G T C A C T G A C G T A C T G C A G T A C G T A C G T A C G T A C G T A C G T A C G T