Information for 15-AGGTCAKAGGAGK (Motif 30)

C T G A A C T G T A C G G C A T T A G C T G C A A C T G T C G A C T A G T C A G G T C A C T A G A C T G
Reverse Opposite:
T G A C G A T C A C G T A G T C A G T C A G C T T G A C A C G T A T C G C G T A A T G C G T A C G A C T
p-value:1e-6
log p-value:-1.525e+01
Information Content per bp:1.611
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif6.03%
Number of Background Sequences with motif1119.1
Percentage of Background Sequences with motif2.36%
Average Position of motif in Targets46.0 +/- 24.6bp
Average Position of motif in Background50.6 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR2F1/MA0017.2/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---AGGTCAKAGGAGK
CAAAGGTCAAGGG---
 A C G T A C G T A C G T C T G A A C T G T A C G G C A T T A G C T G C A A C T G T C G A C T A G T C A G G T C A C T A G A C T G
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGGTCAKAGGAGK
AGGTCA-------
 C T G A A C T G T A C G G C A T T A G C T G C A A C T G T C G A C T A G T C A G G T C A C T A G A C T G
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AGGTCAKAGGAGK
TRAGGTCA-------
 A C G T A C G T C T G A A C T G T A C G G C A T T A G C T G C A A C T G T C G A C T A G T C A G G T C A C T A G A C T G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:4
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AGGTCAKAGGAGK------
--NTNNNAGGAGTCTCNTN
 C T G A A C T G T A C G G C A T T A G C T G C A A C T G T C G A C T A G T C A G G T C A C T A G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A

NR2C2/MA0504.1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGGTCAKAGGAGK
AGGGGTCAGAGGTCA
 A C G T A C G T C T G A A C T G T A C G G C A T T A G C T G C A A C T G T C G A C T A G T C A G G T C A C T A G A C T G
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGGTCAKAGGAGK---
AAGGTCACGAAAGGTCA
 A C G T C T G A A C T G T A C G G C A T T A G C T G C A A C T G T C G A C T A G T C A G G T C A C T A G A C T G A C G T A C G T A C G T
C T G A T C G A A T C G A C T G A C G T G T A C T C G A G T A C A T C G T C G A T C G A T C G A A C T G A C T G G C A T G A T C T C G A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGGTCAKAGGAGK
AGRGGTCA-------
 A C G T A C G T C T G A A C T G T A C G G C A T T A G C T G C A A C T G T C G A C T A G T C A G G T C A C T A G A C T G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----AGGTCAKAGGAGK
ATCAAGGTCA-------
 A C G T A C G T A C G T A C G T C T G A A C T G T A C G G C A T T A G C T G C A A C T G T C G A C T A G T C A G G T C A C T A G A C T G
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGGTCAKAGGAGK
GAGGTCAAAGGTCA
 A C G T C T G A A C T G T A C G G C A T T A G C T G C A A C T G T C G A C T A G T C A G G T C A C T A G A C T G
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGGTCAKAGGAGK
AAGGTCAC------
 A C G T C T G A A C T G T A C G G C A T T A G C T G C A A C T G T C G A C T A G T C A G G T C A C T A G A C T G
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T