Information for 5-TTTTATAGTC (Motif 10)

A G C T C A G T C G A T C G A T C T G A G A C T C T G A A T C G G A C T A T G C
Reverse Opposite:
T A C G C T G A T A G C G A C T C T G A G A C T G C T A C G T A G T C A T C G A
p-value:1e-12
log p-value:-2.921e+01
Information Content per bp:1.663
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif5.97%
Number of Background Sequences with motif876.2
Percentage of Background Sequences with motif1.86%
Average Position of motif in Targets51.9 +/- 29.7bp
Average Position of motif in Background50.1 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL012.1_TATA-Box/Jaspar

Match Rank:1
Score:0.81
Offset:-7
Orientation:reverse strand
Alignment:-------TTTTATAGTC
NNNNNNCTTTTATAN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C A G T C G A T C G A T C T G A G A C T C T G A A T C G G A C T A T G C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T

TBP/MA0108.2/Jaspar

Match Rank:2
Score:0.80
Offset:-7
Orientation:reverse strand
Alignment:-------TTTTATAGTC
NNNNNNCTTTTATAN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C A G T C G A T C G A T C T G A G A C T C T G A A T C G G A C T A T G C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:3
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--TTTTATAGTC
CCTTTTATAGNC
 A C G T A C G T A G C T C A G T C G A T C G A T C T G A G A C T C T G A A T C G G A C T A T G C
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:4
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--TTTTATAGTC
DGWTTTATGRCN
 A C G T A C G T A G C T C A G T C G A T C G A T C T G A G A C T C T G A A T C G G A C T A T G C
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

CDX2/MA0465.1/Jaspar

Match Rank:5
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:TTTTATAGTC-
TTTTATGGCTN
 A G C T C A G T C G A T C G A T C T G A G A C T C T G A A T C G G A C T A T G C A C G T
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

HOXB13/MA0901.1/Jaspar

Match Rank:6
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATAGTC
NTTTTATTGG-
 A C G T A G C T C A G T C G A T C G A T C T G A G A C T C T G A A T C G G A C T A T G C
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:TTTTATAGTC
TTTTATTGC-
 A G C T C A G T C G A T C G A T C T G A G A C T C T G A A T C G G A C T A T G C
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:8
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATAGTC
TTTTTATTGG-
 A C G T A G C T C A G T C G A T C G A T C T G A G A C T C T G A A T C G G A C T A T G C
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:9
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:TTTTATAGTC
TTTAATTGCN
 A G C T C A G T C G A T C G A T C T G A G A C T C T G A A T C G G A C T A T G C
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

PH0078.1_Hoxd13/Jaspar

Match Rank:10
Score:0.75
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATAGTC--
NNANTTTTATTGGNNN
 A C G T A C G T A C G T A C G T A G C T C A G T C G A T C G A T C T G A G A C T C T G A A T C G G A C T A T G C A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G