Information for 5-TGGCARTGAGCCA (Motif 8)

A C G T A C T G A C T G A G T C C G T A T C A G A C G T C T A G T C G A A C T G A G T C A G T C C G T A
Reverse Opposite:
A C G T C T A G A C T G G T A C A C G T A G T C T G C A A G T C C G A T A C T G A G T C A G T C C G T A
p-value:1e-12
log p-value:-2.993e+01
Information Content per bp:1.827
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.30%
Number of Background Sequences with motif19.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets34.6 +/- 20.3bp
Average Position of motif in Background50.1 +/- 22.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:1
Score:0.86
Offset:0
Orientation:forward strand
Alignment:TGGCARTGAGCCA-
TGGCACCATGCCAA
 A C G T A C T G A C T G A G T C C G T A T C A G A C G T C T A G T C G A A C T G A G T C A G T C C G T A A C G T
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-TGGCARTGAGCCA--
TTGGCANNNTGCCAAG
 A C G T A C G T A C T G A C T G A G T C C G T A T C A G A C G T C T A G T C G A A C T G A G T C A G T C C G T A A C G T A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-TGGCARTGAGCCA
CTGGCAGNCTGCCA
 A C G T A C G T A C T G A C T G A G T C C G T A T C A G A C G T C T A G T C G A A C T G A G T C A G T C C G T A
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TGGCARTGAGCCA
NTTGGCANN------
 A C G T A C G T A C G T A C T G A C T G A G T C C G T A T C A G A C G T C T A G T C G A A C T G A G T C A G T C C G T A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGGCARTGAGCCA
TTGGCA--------
 A C G T A C G T A C T G A C T G A G T C C G T A T C A G A C G T C T A G T C G A A C T G A G T C A G T C C G T A
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TGGCARTGAGCCA
CTTGGCAA-------
 A C G T A C G T A C G T A C T G A C T G A G T C C G T A T C A G A C G T C T A G T C G A A C T G A G T C A G T C C G T A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TGGCARTGAGCCA
NNTTGGCANN------
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A T C A G A C G T C T A G T C G A A C T G A G T C A G T C C G T A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---TGGCARTGAGCCA
GGTTGGCAT-------
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A T C A G A C G T C T A G T C G A A C T G A G T C A G T C C G T A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TGGCARTGAGCCA
GTAGGTCACTGGGTCA
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A T C A G A C G T C T A G T C G A A C T G A G T C A G T C C G T A
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---TGGCARTGAGCCA
ARNTGACA--------
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A T C A G A C G T C T A G T C G A A C T G A G T C A G T C C G T A
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T