Information for 16-CCTGTAATCC (Motif 47)

A G T C A G T C A C G T A C T G A C G T C G T A C G T A A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A A C G T A C G T C G T A A G T C C G T A A C T G A C T G
p-value:1e-4
log p-value:-1.132e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.8 +/- 17.9bp
Average Position of motif in Background43.1 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.73
Offset:4
Orientation:forward strand
Alignment:CCTGTAATCC--
----TAATCCCN
 A G T C A G T C A C G T A C T G A C G T C G T A C G T A A C G T A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

Pitx1/MA0682.1/Jaspar

Match Rank:2
Score:0.73
Offset:3
Orientation:forward strand
Alignment:CCTGTAATCC-
---TTAATCCC
 A G T C A G T C A C G T A C T G A C G T C G T A C G T A A C G T A G T C A G T C A C G T
A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C

OTX1/MA0711.1/Jaspar

Match Rank:3
Score:0.73
Offset:3
Orientation:forward strand
Alignment:CCTGTAATCC-
---TTAATCCG
 A G T C A G T C A C G T A C T G A C G T C G T A C G T A A C G T A G T C A G T C A C G T
A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:4
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:CCTGTAATCC-
---YTAATCCY
 A G T C A G T C A C G T A C T G A C G T C G T A C G T A A C G T A G T C A G T C A C G T
A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C

OTX2/MA0712.1/Jaspar

Match Rank:5
Score:0.72
Offset:3
Orientation:forward strand
Alignment:CCTGTAATCC-
---TTAATCCT
 A G T C A G T C A C G T A C T G A C G T C G T A C G T A A C G T A G T C A G T C A C G T
A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T

PITX3/MA0714.1/Jaspar

Match Rank:6
Score:0.71
Offset:2
Orientation:forward strand
Alignment:CCTGTAATCC-
--CTTAATCCC
 A G T C A G T C A C G T A C T G A C G T C G T A C G T A A C G T A G T C A G T C A C G T
A C G T A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:7
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CCTGTAATCC--
--NYTAATCCYB
 A G T C A G T C A C G T A C T G A C G T C G T A C G T A A C G T A G T C A G T C A C G T A C G T
A C G T A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

GSC2/MA0891.1/Jaspar

Match Rank:8
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CCTGTAATCC--
--CCTAATCCGC
 A G T C A G T C A C G T A C T G A C G T C G T A C G T A A C G T A G T C A G T C A C G T A C G T
A C G T A C G T T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C

PB0185.1_Tcf1_2/Jaspar

Match Rank:9
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CCTGTAATCC------
--NNTAATCCNGNCNN
 A G T C A G T C A C G T A C T G A C G T C G T A C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C G C A T T G C A G T C A G A C T G T A C A G T C T C A G A T C G C T A G A G T C T G C A C G T A

GSC/MA0648.1/Jaspar

Match Rank:10
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CCTGTAATCC--
--GCTAATCCCC
 A G T C A G T C A C G T A C T G A C G T C G T A C G T A A C G T A G T C A G T C A C G T A C G T
A C G T A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C