Information for 16-TYTTSCCCTAGAGACA (Motif 40)

C A G T A G C T A G C T A G C T A T C G A T G C A G T C A G T C A C G T G C T A A T C G C G T A C T A G G T C A A T G C C G T A
Reverse Opposite:
C G A T A T C G C A G T G A T C C G A T T A G C C G A T C G T A C T A G C T A G A T C G A T G C C T G A C T G A C T G A G C T A
p-value:1e-7
log p-value:-1.838e+01
Information Content per bp:1.711
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif18.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets56.2 +/- 24.4bp
Average Position of motif in Background55.4 +/- 14.0bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:1
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TYTTSCCCTAGAGACA
-TTCCCCCTAC-----
 C A G T A G C T A G C T A G C T A T C G A T G C A G T C A G T C A C G T G C T A A T C G C G T A C T A G G T C A A T G C C G T A
A C G T A G C T G A C T G T A C G T A C A T G C G T A C G T A C A C G T G T A C T A G C A C G T A C G T A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:TYTTSCCCTAGAGACA
--TTGCCATGGCAACN
 C A G T A G C T A G C T A G C T A T C G A T G C A G T C A G T C A C G T G C T A A T C G C G T A C T A G G T C A A T G C C G T A
A C G T A C G T A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:TYTTSCCCTAGAGACA
--TTGCCATGGCAACC
 C A G T A G C T A G C T A G C T A T C G A T G C A G T C A G T C A C G T G C T A A T C G C G T A C T A G G T C A A T G C C G T A
A C G T A C G T A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

PB0128.1_Gcm1_2/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TYTTSCCCTAGAGACA
NTCNTCCCCTATNNGNN
 A C G T C A G T A G C T A G C T A G C T A T C G A T G C A G T C A G T C A C G T G C T A A T C G C G T A C T A G G T C A A T G C C G T A
T G A C C A G T A G T C T A G C A G C T A G T C T A G C G T A C G T A C A G C T C T G A A G C T C A T G A T G C T A C G G T A C G C T A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.55
Offset:5
Orientation:forward strand
Alignment:TYTTSCCCTAGAGACA-
-----SCCTAGCAACAG
 C A G T A G C T A G C T A G C T A T C G A T G C A G T C A G T C A C G T G C T A A T C G C G T A C T A G G T C A A T G C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

SPIB/MA0081.1/Jaspar

Match Rank:6
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:TYTTSCCCTAGAGACA
--TTCCTCT-------
 C A G T A G C T A G C T A G C T A T C G A T G C A G T C A G T C A C G T G C T A A T C G C G T A C T A G G T C A A T G C C G T A
A C G T A C G T C G A T C G A T G A T C A G T C A C G T A T G C C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:7
Score:0.52
Offset:1
Orientation:forward strand
Alignment:TYTTSCCCTAGAGACA
-GTTGCCATGGCAAC-
 C A G T A G C T A G C T A G C T A T C G A T G C A G T C A G T C A C G T G C T A A T C G C G T A C T A G G T C A A T G C C G T A
A C G T C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----TYTTSCCCTAGAGACA
TTTTTTTTTTTTTTCAGGTT
 A C G T A C G T A C G T A C G T C A G T A G C T A G C T A G C T A T C G A T G C A G T C A G T C A C G T G C T A A T C G C G T A C T A G G T C A A T G C C G T A
G A C T A G C T A G C T G A C T G A C T A G C T A G C T A G C T A G C T G A C T G A C T G A C T G A C T G A C T G A T C C G T A A C T G T C A G G C A T C G A T

PB0159.1_Rfx4_2/Jaspar

Match Rank:9
Score:0.52
Offset:3
Orientation:forward strand
Alignment:TYTTSCCCTAGAGACA--
---TACCCTAGTTACCGA
 C A G T A G C T A G C T A G C T A T C G A T G C A G T C A G T C A C G T G C T A A T C G C G T A C T A G G T C A A T G C C G T A A C G T A C G T
A C G T A C G T A C G T G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

PB0158.1_Rfx3_2/Jaspar

Match Rank:10
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-TYTTSCCCTAGAGACA------
ACTGACCCTTGGTTACCACAAAG
 A C G T C A G T A G C T A G C T A G C T A T C G A T G C A G T C A G T C A C G T G C T A A T C G C G T A C T A G G T C A A T G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G