Information for 1-AASAAKTAMKTAT (Motif 3)

C G T A C G T A A T G C C G T A C G T A A C G T C G A T C G T A G T C A A C G T A C G T C G T A A G C T
Reverse Opposite:
C T G A A C G T C G T A G T C A A C G T A C G T C G T A G T C A A C G T A C G T A T C G A C G T A C G T
p-value:1e-13
log p-value:-3.219e+01
Information Content per bp:1.875
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.8 +/- 29.0bp
Average Position of motif in Background47.7 +/- 8.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0142.1_Pou1f1/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AASAAKTAMKTAT---
GATTAATTAATTAAGTC
 A C G T C G T A C G T A A T G C C G T A C G T A A C G T C G A T C G T A G T C A A C G T A C G T C G T A A G C T A C G T A C G T A C G T
C T A G T C G A C G A T C A G T G T C A G C T A C G A T C G A T C G T A C G T A C G A T C A G T G C T A C G T A C A T G C G A T A G T C

Lhx3/MA0135.1/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:forward strand
Alignment:AASAAKTAMKTAT--
--AAATTAATTAATC
 C G T A C G T A A T G C C G T A C G T A A C G T C G A T C G T A G T C A A C G T A C G T C G T A A G C T A C G T A C G T
A C G T A C G T C G T A T C G A C G T A A C G T A C G T C G T A C G T A G A C T A G C T G C T A C G T A G A C T A G T C

PB0066.1_Sox17_1/Jaspar

Match Rank:3
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---AASAAKTAMKTAT
ATAAACAATTAAACA-
 A C G T A C G T A C G T C G T A C G T A A T G C C G T A C G T A A C G T C G A T C G T A G T C A A C G T A C G T C G T A A G C T
T G C A C G A T C T G A C G T A C G T A A G T C C G T A C G T A C G A T C G A T T C G A G C T A G C A T G A T C C G T A A C G T

PB0172.1_Sox1_2/Jaspar

Match Rank:4
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----AASAAKTAMKTAT
NNNTAACAATTATAN--
 A C G T A C G T A C G T A C G T C G T A C G T A A T G C C G T A C G T A A C G T C G A T C G T A G T C A A C G T A C G T C G T A A G C T
A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G A C G T A C G T

PH0149.1_Pou3f4/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AASAAKTAMKTAT---
AATTAATTAATTAATTC
 A C G T C G T A C G T A A T G C C G T A C G T A A C G T C G A T C G T A G T C A A C G T A C G T C G T A A G C T A C G T A C G T A C G T
C T G A T G C A G C A T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G C T A C T G A C A G T C G A T A G T C

PH0008.1_Barx2/Jaspar

Match Rank:6
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----AASAAKTAMKTAT
NANAANTAATTANTTA-
 A C G T A C G T A C G T A C G T C G T A C G T A A T G C C G T A C G T A A C G T C G A T C G T A G T C A A C G T A C G T C G T A A G C T
G A C T C T G A G A C T G T C A T C G A A G T C G A C T G T C A G C T A C A G T C A G T C T G A T G A C A G C T C G A T C G T A A C G T

PH0028.1_En1/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AASAAKTAMKTAT---
GCGAACTAATTAATGC
 C G T A C G T A A T G C C G T A C G T A A C G T C G A T C G T A G T C A A C G T A C G T C G T A A G C T A C G T A C G T A C G T
T C A G T A G C T A C G T G C A T G C A A G T C A G C T C T G A C T G A C G A T A C G T C T G A C T G A A C G T C T A G T A G C

PB0063.1_Sox13_1/Jaspar

Match Rank:8
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----AASAAKTAMKTAT
TTAAGAACAATAAATT--
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A T G C C G T A C G T A A C G T C G A T C G T A G T C A A C G T A C G T C G T A A G C T
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T A C G T A C G T

PH0119.1_Nkx6-1_2/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AASAAKTAMKTAT---
AGTAATTAATTACTTC
 C G T A C G T A A T G C C G T A C G T A A C G T C G A T C G T A G T C A A C G T A C G T C G T A A G C T A C G T A C G T A C G T
T C G A T C A G G A C T G C T A C G T A C G A T A G C T C G T A C G T A C G A T A C G T C T G A A G T C A C G T G A C T A G T C

PH0038.1_Hlx/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AASAAKTAMKTAT-
CCATAATTAATTACA
 A C G T C G T A C G T A A T G C C G T A C G T A A C G T C G A T C G T A G T C A A C G T A C G T C G T A A G C T A C G T
G T A C G T A C G T C A G A C T G C T A C G T A G A C T G C A T C T G A C T G A G C A T C G A T C T G A G A T C G T C A