Information for 3-AGCCAATAAC (Motif 4)

T C G A C T A G G T A C G T A C C G T A C G T A C A G T T G C A C G T A A G T C
Reverse Opposite:
C T A G A C G T A C G T G C T A A C G T A C G T A C T G A C T G A G T C A C G T
p-value:1e-13
log p-value:-3.178e+01
Information Content per bp:1.844
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.02%
Number of Background Sequences with motif66.0
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets48.9 +/- 26.7bp
Average Position of motif in Background52.4 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---AGCCAATAAC
ACTAGCCAATCA-
 A C G T A C G T A C G T T C G A C T A G G T A C G T A C C G T A C G T A C A G T T G C A C G T A A G T C
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.74
Offset:0
Orientation:forward strand
Alignment:AGCCAATAAC
AGCCAATCGG
 T C G A C T A G G T A C G T A C C G T A C G T A C A G T T G C A C G T A A G T C
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----AGCCAATAAC
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A C G T T C G A C T A G G T A C G T A C C G T A C G T A C A G T T G C A C G T A A G T C
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

HOXB13/MA0901.1/Jaspar

Match Rank:4
Score:0.68
Offset:2
Orientation:forward strand
Alignment:AGCCAATAAC--
--CCAATAAAAC
 T C G A C T A G G T A C G T A C C G T A C G T A C A G T T G C A C G T A A G T C A C G T A C G T
A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

PH0057.1_Hoxb13/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AGCCAATAAC-----
AACCCAATAAAATTCG
 A C G T T C G A C T A G G T A C G T A C C G T A C G T A C A G T T G C A C G T A A G T C A C G T A C G T A C G T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

HOXA13/MA0650.1/Jaspar

Match Rank:6
Score:0.66
Offset:2
Orientation:forward strand
Alignment:AGCCAATAAC--
--CCAATAAAAA
 T C G A C T A G G T A C G T A C C G T A C G T A C A G T T G C A C G T A A G T C A C G T A C G T
A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

MSX2/MA0708.1/Jaspar

Match Rank:7
Score:0.66
Offset:2
Orientation:forward strand
Alignment:AGCCAATAAC
--CCAATTAA
 T C G A C T A G G T A C G T A C C G T A C G T A C A G T T G C A C G T A A G T C
A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AGCCAATAAC
TGCCAA----
 T C G A C T A G G T A C G T A C C G T A C G T A C A G T T G C A C G T A A G T C
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

MSX1/MA0666.1/Jaspar

Match Rank:9
Score:0.66
Offset:2
Orientation:forward strand
Alignment:AGCCAATAAC
--CCAATTAG
 T C G A C T A G G T A C G T A C C G T A C G T A C A G T T G C A C G T A A G T C
A C G T A C G T A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G

EN2/MA0642.1/Jaspar

Match Rank:10
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AGCCAATAAC-
-CCCAATTAGC
 T C G A C T A G G T A C G T A C C G T A C G T A C A G T T G C A C G T A A G T C A C G T
A C G T T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C