Information for 1-GTGGCCTAGT (Motif 2)

C A T G A C G T T C A G T C A G A T G C G T A C G A C T G C T A C T A G G C A T
Reverse Opposite:
C G T A A G T C C G A T C T G A C A T G T A C G A G T C A G T C C G T A G T A C
p-value:1e-13
log p-value:-3.154e+01
Information Content per bp:1.686
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif4.96%
Number of Background Sequences with motif548.4
Percentage of Background Sequences with motif1.12%
Average Position of motif in Targets49.1 +/- 26.9bp
Average Position of motif in Background50.7 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:GTGGCCTAGT-
-TGACCTARTT
 C A T G A C G T T C A G T C A G A T G C G T A C G A C T G C T A C T A G G C A T A C G T
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GTGGCCTAGT
BNTGDCCTTG-
 A C G T C A T G A C G T T C A G T C A G A T G C G T A C G A C T G C T A C T A G G C A T
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GTGGCCTAGT
-AGGCCTAG-
 C A T G A C G T T C A G T C A G A T G C G T A C G A C T G C T A C T A G G C A T
A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GTGGCCTAGT
GTGACCTT--
 C A T G A C G T T C A G T C A G A T G C G T A C G A C T G C T A C T A G G C A T
A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GTGGCCTAGT----
TTGACCTANTTATN
 C A T G A C G T T C A G T C A G A T G C G T A C G A C T G C T A C T A G G C A T A C G T A C G T A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORA/MA0071.1/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GTGGCCTAGT-
-TGACCTTGAT
 C A T G A C G T T C A G T C A G A T G C G T A C G A C T G C T A C T A G G C A T A C G T
A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GTGGCCTAGT
-TGACCTYA-
 C A T G A C G T T C A G T C A G A T G C G T A C G A C T G C T A C T A G G C A T
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GTGGCCTAGT-
-TGACCTTGAV
 C A T G A C G T T C A G T C A G A T G C G T A C G A C T G C T A C T A G G C A T A C G T
A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GTGGCCTAGT-
-TGACCTTGAN
 C A T G A C G T T C A G T C A G A T G C G T A C G A C T G C T A C T A G G C A T A C G T
A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GTGGCCTAGT
-TGACCT---
 C A T G A C G T T C A G T C A G A T G C G T A C G A C T G C T A C T A G G C A T
A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T