Information for 21-AACATGCAATAAAHAA (Motif 45)

C G T A G T C A G T A C G T C A A C G T A C T G A T G C C T G A C G T A C G A T C G T A G T C A G T C A G T A C C G T A C T G A
Reverse Opposite:
A G C T A C G T C A T G A C G T A C G T A C G T C G T A A C G T A G C T A T C G A G T C C G T A A C G T A C T G A C G T A C G T
p-value:1e-7
log p-value:-1.613e+01
Information Content per bp:1.777
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif7.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets51.8 +/- 22.6bp
Average Position of motif in Background28.2 +/- 11.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0063.1_Hoxb8/Jaspar

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AACATGCAATAAAHAA-
-ACCGGCAATTAATAAA
 C G T A G T C A G T A C G T C A A C G T A C T G A T G C C T G A C G T A C G A T C G T A G T C A G T C A G T A C C G T A C T G A A C G T
A C G T G C T A T A G C A G T C C A T G C T A G G A T C G T C A C G T A C G A T G C A T C G T A G C T A G A C T G T C A C T G A C G T A

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AACATGCAATAAAHAA
-AGATGCAATCCC---
 C G T A G T C A G T A C G T C A A C G T A C T G A T G C C T G A C G T A C G A T C G T A G T C A G T C A G T A C C G T A C T G A
A C G T T C G A C T A G C T G A A G C T A C T G G T A C G T C A T G C A A G C T T G A C T A G C A G T C A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:3
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AACATGCAATAAAHAA
---AAGCCATAAAA--
 C G T A G T C A G T A C G T C A A C G T A C T G A T G C C T G A C G T A C G A T C G T A G T C A G T C A G T A C C G T A C T G A
A C G T A C G T A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.56
Offset:5
Orientation:forward strand
Alignment:AACATGCAATAAAHAA
-----GTCATAAAAN-
 C G T A G T C A G T A C G T C A A C G T A C T G A T G C C T G A C G T A C G A T C G T A G T C A G T C A G T A C C G T A C T G A
A C G T A C G T A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:5
Score:0.56
Offset:5
Orientation:forward strand
Alignment:AACATGCAATAAAHAA
-----GCAATAAAAA-
 C G T A G T C A G T A C G T C A A C G T A C T G A T G C C T G A C G T A C G A T C G T A G T C A G T C A G T A C C G T A C T G A
A C G T A C G T A C G T A C G T A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A A C G T

CDX1/MA0878.1/Jaspar

Match Rank:6
Score:0.56
Offset:5
Orientation:forward strand
Alignment:AACATGCAATAAAHAA
-----GCAATAAAA--
 C G T A G T C A G T A C G T C A A C G T A C T G A T G C C T G A C G T A C G A T C G T A G T C A G T C A G T A C C G T A C T G A
A C G T A C G T A C G T A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AACATGCAATAAAHAA----
NNCCTGNAAAAAAAAAAAAA
 C G T A G T C A G T A C G T C A A C G T A C T G A T G C C T G A C G T A C G A T C G T A G T C A G T C A G T A C C G T A C T G A A C G T A C G T A C G T A C G T
G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A

HOXA10/MA0899.1/Jaspar

Match Rank:8
Score:0.56
Offset:4
Orientation:forward strand
Alignment:AACATGCAATAAAHAA
----GGTAATAAAAA-
 C G T A G T C A G T A C G T C A A C G T A C T G A T G C C T G A C G T A C G A T C G T A G T C A G T C A G T A C C G T A C T G A
A C G T A C G T A C G T A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:9
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:AACATGCAATAAAHAA--
-------AATAAACAATN
 C G T A G T C A G T A C G T C A A C G T A C T G A T G C C T G A C G T A C G A T C G T A G T C A G T C A G T A C C G T A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A T G C A A G C T C G T A C G T A C G T A A G T C C G T A C G T A A G C T C G T A

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AACATGCAATAAAHAA----
NNCCTGNAAAAAAAAAAAAA
 C G T A G T C A G T A C G T C A A C G T A C T G A T G C C T G A C G T A C G A T C G T A G T C A G T C A G T A C C G T A C T G A A C G T A C G T A C G T A C G T
G C T A C G T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A C T G A C T G A C T G A T C G A C T G A