Information for 4-CGACATTGCC (Motif 35)

A T G C A T C G C G T A A G T C C G T A A C G T A C G T A C T G A T G C A G T C
Reverse Opposite:
A C T G A T C G A G T C C G T A C G T A C G A T A C T G C G A T T A G C A T C G
p-value:1e-8
log p-value:-1.941e+01
Information Content per bp:1.873
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif23.6
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets50.5 +/- 11.1bp
Average Position of motif in Background47.4 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17/MA0078.1/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CGACATTGCC
-CTCATTGTC
 A T G C A T C G C G T A A G T C C G T A A C G T A C G T A C T G A T G C A G T C
A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C

PB0014.1_Esrra_1/Jaspar

Match Rank:2
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----CGACATTGCC--
NNNNATGACCTTGANTN
 A C G T A C G T A C G T A C G T A C G T A T G C A T C G C G T A A G T C C G T A A C G T A C G T A C T G A T G C A G T C A C G T A C G T
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CGACATTGCC
GTCCGCCATTA--
 A C G T A C G T A C G T A T G C A T C G C G T A A G T C C G T A A C G T A C G T A C T G A T G C A G T C
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.58
Offset:5
Orientation:forward strand
Alignment:CGACATTGCC---
-----TTGCCAAG
 A T G C A T C G C G T A A G T C C G T A A C G T A C G T A C T G A T G C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CGACATTGCC---
----NTTGGCANN
 A T G C A T C G C G T A A G T C C G T A A C G T A C G T A C T G A T G C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

Hnf4a/MA0114.3/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CGACATTGCC---
ATTGGACTTTGACCCC
 A C G T A C G T A C G T A T G C A T C G C G T A A G T C C G T A A C G T A C G T A C T G A T G C A G T C A C G T A C G T A C G T
C T G A A G C T G A C T T C A G T C A G T G C A T G A C A G C T G A C T A G C T T C A G G T C A G T A C G A T C A G T C A G T C

NFY(CCAAT)/Promoter/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CGACATTGCC-
-CCGATTGGCT
 A T G C A T C G C G T A A G T C C G T A A C G T A C G T A C T G A T G C A G T C A C G T
A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

PB0131.1_Gmeb1_2/Jaspar

Match Rank:8
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CGACATTGCC--
TNAACGACGTCGNCCA
 A C G T A C G T A C G T A C G T A T G C A T C G C G T A A G T C C G T A A C G T A C G T A C T G A T G C A G T C A C G T A C G T
C G A T C A G T T C G A C T G A G T A C T C A G G C T A T A G C A C T G C A G T A G T C C A T G T G A C A G T C G T A C G T C A

Sox6/MA0515.1/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CGACATTGCC--
--CCATTGTTTT
 A T G C A T C G C G T A A G T C C G T A A C G T A C G T A C T G A T G C A G T C A C G T A C G T
A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

SOX10/MA0442.1/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CGACATTGCC
---CTTTGT-
 A T G C A T C G C G T A A G T C C G T A A C G T A C G T A C T G A T G C A G T C
A C G T A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T