Information for 20-TGCCTCTCCTTAGTGG (Motif 33)

C G A T A C T G T G A C A G T C A C G T A G T C A G C T A G T C A G T C A G C T A C G T C G T A A C T G A C G T C T A G A C T G
Reverse Opposite:
A G T C A G T C C G T A A G T C A C G T C G T A C T G A C T A G A C T G C T G A A C T G C G T A A C T G A C T G A G T C C G T A
p-value:1e-8
log p-value:-1.997e+01
Information Content per bp:1.918
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.5 +/- 23.8bp
Average Position of motif in Background47.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TGCCTCTCCTTAGTGG---
TAGCGCCCCCTGGTGGCCA
 C G A T A C T G T G A C A G T C A C G T A G T C A G C T A G T C A G T C A G C T A C G T C G T A A C T G A C G T C T A G A C T G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TGCCTCTCCTTAGTGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T C G A T A C T G T G A C A G T C A C G T A G T C A G C T A G T C A G T C A G C T A C G T C G T A A C T G A C G T C T A G A C T G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TGCCTCTCCTTAGTGG---
ANAGTGCCACCTGGTGGCCA
 A C G T C G A T A C T G T G A C A G T C A C G T A G T C A G C T A G T C A G T C A G C T A C G T C G T A A C T G A C G T C T A G A C T G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0180.1_Sp4_2/Jaspar

Match Rank:4
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--TGCCTCTCCTTAGTGG
NNGGCCACGCCTTTN---
 A C G T A C G T C G A T A C T G T G A C A G T C A C G T A G T C A G C T A G T C A G T C A G C T A C G T C G T A A C T G A C G T C T A G A C T G
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:5
Score:0.50
Offset:8
Orientation:reverse strand
Alignment:TGCCTCTCCTTAGTGG-
--------TTAAGTGGT
 C G A T A C T G T G A C A G T C A C G T A G T C A G C T A G T C A G T C A G C T A C G T C G T A A C T G A C G T C T A G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:6
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:TGCCTCTCCTTAGTGG
-GCCMCRCCCH-----
 C G A T A C T G T G A C A G T C A C G T A G T C A G C T A G T C A G T C A G C T A C G T C G T A A C T G A C G T C T A G A C T G
A C G T C T A G G T A C G A T C G T C A G A T C C T G A A G T C A G T C A G T C G C A T A C G T A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.49
Offset:8
Orientation:forward strand
Alignment:TGCCTCTCCTTAGTGG--
--------TTRAGTGSYK
 C G A T A C T G T G A C A G T C A C G T A G T C A G C T A G T C A G T C A G C T A C G T C G T A A C T G A C G T C T A G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Sox2/MA0143.3/Jaspar

Match Rank:8
Score:0.49
Offset:7
Orientation:forward strand
Alignment:TGCCTCTCCTTAGTGG
-------CCTTTGTT-
 C G A T A C T G T G A C A G T C A C G T A G T C A G C T A G T C A G T C A G C T A C G T C G T A A C T G A C G T C T A G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:9
Score:0.49
Offset:8
Orientation:reverse strand
Alignment:TGCCTCTCCTTAGTGG-
--------TTAAGTGGN
 C G A T A C T G T G A C A G T C A C G T A G T C A G C T A G T C A G T C A G C T A C G T C G T A A C T G A C G T C T A G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:10
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:TGCCTCTCCTTAGTGG--
-------CTTGAGTGGCT
 C G A T A C T G T G A C A G T C A C G T A G T C A G C T A G T C A G T C A G C T A C G T C G T A A C T G A C G T C T A G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T