Information for 16-CTGTCTATAAATCACA (Motif 28)

G T A C C G A T A C T G G C A T G A T C A G C T C T G A A G C T G T C A C T G A C G T A C G A T G T A C C G T A A G T C G C T A
Reverse Opposite:
C A G T C T A G A C G T A C T G G C T A A C G T A G C T C A G T C T G A G A C T C T G A C T A G C G T A T A G C C G T A C A T G
p-value:1e-8
log p-value:-2.057e+01
Information Content per bp:1.694
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.49%
Number of Background Sequences with motif54.0
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets46.2 +/- 24.7bp
Average Position of motif in Background48.2 +/- 25.3bp
Strand Bias (log2 ratio + to - strand density)-1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CTGTCTATAAATCACA
--GGCCATAAATCAC-
 G T A C C G A T A C T G G C A T G A T C A G C T C T G A A G C T G T C A C T G A C G T A C G A T G T A C C G T A A G T C G C T A
A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CTGTCTATAAATCACA
--GGCCATAAATCA--
 G T A C C G A T A C T G G C A T G A T C A G C T C T G A A G C T G T C A C T G A C G T A C G A T G T A C C G T A A G T C G C T A
A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CTGTCTATAAATCACA
--GGCCATAAATCA--
 G T A C C G A T A C T G G C A T G A T C A G C T C T G A A G C T G T C A C T G A C G T A C G A T G T A C C G T A A G T C G C T A
A C G T A C G T C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:4
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CTGTCTATAAATCACA
---GCCATAAATCA--
 G T A C C G A T A C T G G C A T G A T C A G C T C T G A A G C T G T C A C T G A C G T A C G A T G T A C C G T A A G T C G C T A
A C G T A C G T A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:5
Score:0.58
Offset:7
Orientation:forward strand
Alignment:CTGTCTATAAATCACA-
-------CAAATCACTG
 G T A C C G A T A C T G G C A T G A T C A G C T C T G A A G C T G T C A C T G A C G T A C G A T G T A C C G T A A G T C G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:6
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CTGTCTATAAATCACA
--GSCTGTCACTCA--
 G T A C C G A T A C T G G C A T G A T C A G C T C T G A A G C T G T C A C T G A C G T A C G A T G T A C C G T A A G T C G C T A
A C G T A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:7
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CTGTCTATAAATCACA
----TCATCAATCA--
 G T A C C G A T A C T G G C A T G A T C A G C T C T G A A G C T G T C A C T G A C G T A C G A T G T A C C G T A A G T C G C T A
A C G T A C G T A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CTGTCTATAAATCACA
---NCTGTCAATCAN-
 G T A C C G A T A C T G G C A T G A T C A G C T C T G A A G C T G T C A C T G A C G T A C G A T G T A C C G T A A G T C G C T A
A C G T A C G T A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T

Gfi1b/MA0483.1/Jaspar

Match Rank:9
Score:0.54
Offset:8
Orientation:forward strand
Alignment:CTGTCTATAAATCACA---
--------AAATCACAGCA
 G T A C C G A T A C T G G C A T G A T C A G C T C T G A A G C T G T C A C T G A C G T A C G A T G T A C C G T A A G T C G C T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:10
Score:0.54
Offset:8
Orientation:forward strand
Alignment:CTGTCTATAAATCACA--
--------AAACCACANN
 G T A C C G A T A C T G G C A T G A T C A G C T C T G A A G C T G T C A C T G A C G T A C G A T G T A C C G T A A G T C G C T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A