Information for 6-AAAAATATGCAGGAAT (Motif 10)

C G T A T C G A T C G A G T C A G C T A C G A T C T G A A C G T A C T G G T A C C G T A A C T G A C T G C G T A C G T A C A G T
Reverse Opposite:
G C T A G A C T A C G T G T A C G T A C A C G T C A T G G T A C C G T A A G C T C G T A C G A T A C G T A G C T A G C T C G A T
p-value:1e-11
log p-value:-2.642e+01
Information Content per bp:1.722
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.22%
Number of Background Sequences with motif16.0
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets57.4 +/- 22.3bp
Average Position of motif in Background50.7 +/- 22.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:AAAAATATGCAGGAAT
--GHATATKCAT----
 C G T A T C G A T C G A G T C A G C T A C G A T C T G A A C G T A C T G G T A C C G T A A C T G A C T G C G T A C G T A C A G T
A C G T A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:AAAAATATGCAGGAAT
--GAATATTCAT----
 C G T A T C G A T C G A G T C A G C T A C G A T C T G A A C G T A C T G G T A C C G T A A C T G A C T G C G T A C G T A C A G T
A C G T A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AAAAATATGCAGGAAT
ATGAATATTCATGAG-
 C G T A T C G A T C G A G T C A G C T A C G A T C T G A A C G T A C T G G T A C C G T A A C T G A C T G C G T A C G T A C A G T
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:4
Score:0.60
Offset:3
Orientation:forward strand
Alignment:AAAAATATGCAGGAAT---
---ACTATGAATGAATGAT
 C G T A T C G A T C G A G T C A G C T A C G A T C T G A A C G T A C T G G T A C C G T A A C T G A C T G C G T A C G T A C A G T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

PH0148.1_Pou3f3/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AAAAATATGCAGGAAT-
TNNATTATGCATANNTT
 C G T A T C G A T C G A G T C A G C T A C G A T C T G A A C G T A C T G G T A C C G T A A C T G A C T G C G T A C G T A C A G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

PB0178.1_Sox8_2/Jaspar

Match Rank:6
Score:0.59
Offset:4
Orientation:forward strand
Alignment:AAAAATATGCAGGAAT--
----ACATTCATGACACG
 C G T A T C G A T C G A G T C A G C T A C G A T C T G A A C G T A C T G G T A C C G T A A C T G A C T G C G T A C G T A C A G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

PB0162.1_Sfpi1_2/Jaspar

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:AAAAATATGCAGGAAT-
---CAAATTCCGGAACC
 C G T A T C G A T C G A G T C A G C T A C G A T C T G A A C G T A C T G G T A C C G T A A C T G A C T G C G T A C G T A C A G T A C G T
A C G T A C G T A C G T G T A C G C T A C T G A G C T A G C A T C G A T G T A C T G A C T C A G T C A G C G T A G C T A G T A C G T A C

PH0150.1_Pou4f3/Jaspar

Match Rank:8
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AAAAATATGCAGGAAT--
--AGTTATTAATGAGGTC
 C G T A T C G A T C G A G T C A G C T A C G A T C T G A A C G T A C T G G T A C C G T A A C T G A C T G C G T A C G T A C A G T A C G T A C G T
A C G T A C G T G C T A T C A G C A G T G C A T C G T A G A C T C G A T C G T A C G T A G A C T C A T G G T C A C T A G A C T G G A C T G A T C

POU4F1/MA0790.1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AAAAATATGCAGGAAT
CATTAATTATTCAT----
 A C G T A C G T C G T A T C G A T C G A G T C A G C T A C G A T C T G A A C G T A C T G G T A C C G T A A C T G A C T G C G T A C G T A C A G T
G T A C C T G A A G C T G C A T G C T A G C T A G C A T G C A T C G T A C G A T C A G T G A T C C T G A A G C T A C G T A C G T A C G T A C G T

PB0006.1_Bcl6b_1/Jaspar

Match Rank:10
Score:0.57
Offset:3
Orientation:forward strand
Alignment:AAAAATATGCAGGAAT---
---TCTTTCGAGGAATTTG
 C G T A T C G A T C G A G T C A G C T A C G A T C T G A A C G T A C T G G T A C C G T A A C T G A C T G C G T A C G T A C A G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T G A T C G A C T C G A T C G A T A G T C A C T G C G T A T C A G C A T G C G T A G C T A G A C T G C A T G A C T T A C G