Information for 5-GGATAAATTTTCT (Motif 6)

A C T G A C T G C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A G T C A C G T
Reverse Opposite:
C G T A A C T G C G T A C G T A C G T A C G T A A C G T A C G T A C G T C G T A A C G T A G T C A G T C
p-value:1e-4
log p-value:-1.027e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.0 +/- 0.0bp
Average Position of motif in Background56.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0124.1_Obox5_1/Jaspar

Match Rank:1
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----GGATAAATTTTCT
TAGAGGGATTAAATTTC-
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A G T C A C G T
G C A T C T G A T C A G T C G A T C A G C T A G C A T G C G T A A C G T C G A T C G T A C G T A G C T A G A C T A G C T G C A T G T A C A C G T

PH0130.1_Otx2/Jaspar

Match Rank:2
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----GGATAAATTTTCT
TGTAGGGATTAATTGTC-
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A G T C A C G T
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C A C G T

PH0125.1_Obox5_2/Jaspar

Match Rank:3
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----GGATAAATTTTCT
NANAGGGATTAATTATN-
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A G T C A C G T
T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C A C G T

PH0138.1_Pitx2/Jaspar

Match Rank:4
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----GGATAAATTTTCT
TGAAGGGATTAATCATC-
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A G T C A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C A C G T

PH0129.1_Otx1/Jaspar

Match Rank:5
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GGATAAATTTTCT
AGAGGGGATTAATTTAT-
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A G T C A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GGATAAATTTTCT
GKMTCADRTTWC-
 A C T G A C T G C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A G T C A C G T
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C A C G T

PB0175.1_Sox4_2/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GGATAAATTTTCT----
GGAAAAATTGTTAGGAA
 A C T G A C T G C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GGATAAATTTTCT
GKVTCADRTTWC-
 A C T G A C T G C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A G T C A C G T
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GGATAAATTTTCT--
NNNNTGAATTCANNNC
 A C G T A C T G A C T G C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T
A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C

PH0075.1_Hoxd10/Jaspar

Match Rank:10
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GGATAAATTTTCT------
--NTNAATTTTATTGNATT
 A C T G A C T G C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T