Information for 16-GGAGGAATAAAAA (Motif 17)

A C T G A C T G C G T A A C T G A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A G T C A G T C A C G T A G T C A G T C
p-value:1e-4
log p-value:-1.027e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets6.0 +/- 0.0bp
Average Position of motif in Background16.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0064.1_Hoxb9/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GGAGGAATAAAAA---
AGAGCCATAAAATTCG
 A C T G A C T G C G T A A C T G A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A C G T A A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

HOXA10/MA0899.1/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GGAGGAATAAAAA
--GGTAATAAAAA
 A C T G A C T G C G T A A C T G A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A C G T A
A C G T A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

CDX2/MA0465.1/Jaspar

Match Rank:3
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GGAGGAATAAAAA
-AAGCCATAAAA-
 A C T G A C T G C G T A A C T G A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A C G T A
A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:4
Score:0.68
Offset:3
Orientation:forward strand
Alignment:GGAGGAATAAAAA
---GCAATAAAAA
 A C T G A C T G C G T A A C T G A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A C G T A
A C G T A C G T A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:5
Score:0.68
Offset:3
Orientation:forward strand
Alignment:GGAGGAATAAAAA
---GTCATAAAAN
 A C T G A C T G C G T A A C T G A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A C G T A
A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

PB0186.1_Tcf3_2/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GGAGGAATAAAAA--
AGCCGAAAAAAAAAT
 A C T G A C T G C G T A A C T G A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A C G T A A C G T A C G T
C T G A T A C G A T G C T A G C A C T G C G T A C T G A G C T A G C T A G C T A T G C A G C T A T C G A G C T A G C A T

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GGAGGAATAAAAA
---GCAATAAAA-
 A C T G A C T G C G T A A C T G A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A C G T A
A C G T A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:8
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GGAGGAATAAAAA
---CCAATAAAAA
 A C T G A C T G C G T A A C T G A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A C G T A
A C G T A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXA13/MA0650.1/Jaspar

Match Rank:9
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GGAGGAATAAAAA
---CCAATAAAAA
 A C T G A C T G C G T A A C T G A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A C G T A
A C G T A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

PH0013.1_Cdx2/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GGAGGAATAAAAA--
AAAGGTAATAAAATTT
 A C G T A C T G A C T G C G T A A C T G A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A C G T A A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T