Information for 1-CCTTTGCGATATTTAA (Motif 1)

A G T C A G T C A C G T A C G T A C G T A C T G A G T C A C T G C G T A A C G T G T C A A C G T A C G T A C G T C T G A C G T A
Reverse Opposite:
A C G T A G C T G T C A C G T A C G T A A C G T C G T A C G A T G T A C A C T G A G T C C G T A C G T A C G T A A C T G A C T G
p-value:1e-8
log p-value:-1.843e+01
Information Content per bp:1.942
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif66.67%
Number of Background Sequences with motif5.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets60.7 +/- 19.6bp
Average Position of motif in Background45.8 +/- 39.7bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0020.1_Dlx1/Jaspar

Match Rank:1
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CCTTTGCGATATTTAA-
---CTGAGGTAATTAAT
 A G T C A G T C A C G T A C G T A C G T A C T G A G T C A C T G C G T A A C G T G T C A A C G T A C G T A C G T C T G A C G T A A C G T
A C G T A C G T A C G T A G T C A G C T C T A G T G C A C T A G C T A G G A C T T C G A C G T A C G A T A C G T C T G A C G T A A G C T

PB0146.1_Mafk_2/Jaspar

Match Rank:2
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CCTTTGCGATATTTAA
-CCTTGCAATTTTTNN
 A G T C A G T C A C G T A C G T A C G T A C T G A G T C A C T G C G T A A C G T G T C A A C G T A C G T A C G T C T G A C G T A
A C G T A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C

Arid5a/MA0602.1/Jaspar

Match Rank:3
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CCTTTGCGATATTTAA
-NNTNNCAATATTAG-
 A G T C A G T C A C G T A C G T A C G T A C T G A G T C A C T G C G T A A C G T G T C A A C G T A C G T A C G T C T G A C G T A
A C G T C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:4
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CCTTTGCGATATTTAA
-NNTNNCAATATTAG-
 A G T C A G T C A C G T A C G T A C G T A C T G A G T C A C T G C G T A A C G T G T C A A C G T A C G T A C G T C T G A C G T A
A C G T C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T

Hoxd3/MA0912.1/Jaspar

Match Rank:5
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CCTTTGCGATATTTAA---
---TTGAGTTAATTAACCT
 A G T C A G T C A C G T A C G T A C G T A C T G A G T C A C T G C G T A A C G T G T C A A C G T A C G T A C G T C T G A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C G A T C A T G C T G A C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A T G C A G C T

PH0079.1_Hoxd3/Jaspar

Match Rank:6
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CCTTTGCGATATTTAA---
---TTGAGTTAATTAACCT
 A G T C A G T C A C G T A C G T A C G T A C T G A G T C A C T G C G T A A C G T G T C A A C G T A C G T A C G T C T G A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C G A T C A T G C T G A C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A T G C A G C T

PH0050.1_Hoxa3/Jaspar

Match Rank:7
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CCTTTGCGATATTTAA-
---TTGAGGTAATTAGT
 A G T C A G T C A C G T A C G T A C G T A C T G A G T C A C T G C G T A A C G T G T C A A C G T A C G T A C G T C T G A C G T A A C G T
A C G T A C G T A C G T C A G T A G C T T A C G G T C A T C A G A T C G A G C T G T C A G T C A A C G T A C G T C T G A T C A G A G C T

PB0031.1_Hoxa3_1/Jaspar

Match Rank:8
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CCTTTGCGATATTTAA-
---TGGAGGTAATTAAC
 A G T C A G T C A C G T A C G T A C G T A C T G A G T C A C T G C G T A A C G T G T C A A C G T A C G T A C G T C T G A C G T A A C G T
A C G T A C G T A C G T C A G T A C T G A T C G G C T A C T A G A T C G G A C T G T C A C G T A A C G T A C G T C T G A T C G A A G T C

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CCTTTGCGATATTTAA
CCTTTGATGT------
 A G T C A G T C A C G T A C G T A C G T A C T G A G T C A C T G C G T A A C G T G T C A A C G T A C G T A C G T C T G A C G T A
A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T A C G T A C G T A C G T A C G T A C G T A C G T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CCTTTGCGATATTTAA
CCTTTGAWGT------
 A G T C A G T C A C G T A C G T A C G T A C T G A G T C A C T G C G T A A C G T G T C A A C G T A C G T A C G T C T G A C G T A
A T G C A G T C A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T