Information for 5-RGKGAAASACTGAMTA (Motif 6)

C T A G T A C G C A T G T C A G C G T A G T C A C G T A T A C G G T C A A T G C C G A T A T C G C T G A G T A C C A G T C T G A
Reverse Opposite:
A G C T G T C A C A T G A G C T A T G C C G T A A T C G A C G T A T G C C G A T A C G T G A C T A G T C G T A C A G T C G A T C
p-value:1e-7
log p-value:-1.810e+01
Information Content per bp:1.608
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif245.1
Percentage of Background Sequences with motif0.54%
Average Position of motif in Targets64.6 +/- 19.9bp
Average Position of motif in Background49.3 +/- 33.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-RGKGAAASACTGAMTA
AGGTGNCAGACAG----
 A C G T C T A G T A C G C A T G T C A G C G T A G T C A C G T A T A C G G T C A A T G C C G A T A T C G C T G A G T A C C A G T C T G A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T

NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:2
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--RGKGAAASACTGAMTA--
NANTGGAAAAANTGAGTCAN
 A C G T A C G T C T A G T A C G C A T G T C A G C G T A G T C A C G T A T A C G G T C A A T G C C G A T A T C G C T G A G T A C C A G T C T G A A C G T A C G T
T A C G C T G A T C G A C G A T C T A G C T A G T C G A C T G A T C G A T C G A C G T A T C G A G C A T C A T G C G T A T A C G G C A T T G A C C G T A A G C T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:RGKGAAASACTGAMTA
-----ATGCCAGACN-
 C T A G T A C G C A T G T C A G C G T A G T C A C G T A T A C G G T C A A T G C C G A T A T C G C T G A G T A C C A G T C T G A
A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-RGKGAAASACTGAMTA
AGGTGHCAGACA-----
 A C G T C T A G T A C G C A T G T C A G C G T A G T C A C G T A T A C G G T C A A T G C C G A T A T C G C T G A G T A C C A G T C T G A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T

ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:RGKGAAASACTGAMTA-
--AGAGRRACAGCWGAC
 C T A G T A C G C A T G T C A G C G T A G T C A C G T A T A C G G T C A A T G C C G A T A T C G C T G A G T A C C A G T C T G A A C G T
A C G T A C G T T C G A C T A G C G T A C T A G C T G A T C A G C G T A A G T C C G T A T C A G T G A C G C A T A C T G C G T A A G T C

SOX8/MA0868.1/Jaspar

Match Rank:6
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:RGKGAAASACTGAMTA-----
-----AACACTGCACATTGTT
 C T A G T A C G C A T G T C A G C G T A G T C A C G T A T A C G G T C A A T G C C G A T A T C G C T G A G T A C C A G T C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C G T A A G T C G T C A G T A C A C G T T A C G T G A C C G T A G A T C G T C A A C G T A G C T A C T G A C G T C G A T

POL002.1_INR/Jaspar

Match Rank:7
Score:0.48
Offset:5
Orientation:reverse strand
Alignment:RGKGAAASACTGAMTA
-----NNNANTGA---
 C T A G T A C G C A T G T C A G C G T A G T C A C G T A T A C G G T C A A T G C C G A T A T C G C T G A G T A C C A G T C T G A
A C G T A C G T A C G T A C G T A C G T T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A A C G T A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:8
Score:0.47
Offset:7
Orientation:reverse strand
Alignment:RGKGAAASACTGAMTA
-------NCGTGACN-
 C T A G T A C G C A T G T C A G C G T A G T C A C G T A T A C G G T C A A T G C C G A T A T C G C T G A G T A C C A G T C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.47
Offset:-3
Orientation:reverse strand
Alignment:---RGKGAAASACTGAMTA
GAAAGTGAAAGT-------
 A C G T A C G T A C G T C T A G T A C G C A T G T C A G C G T A G T C A C G T A T A C G G T C A A T G C C G A T A T C G C T G A G T A C C A G T C T G A
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.47
Offset:-1
Orientation:forward strand
Alignment:-RGKGAAASACTGAMTA
TGACANARRCCAGRC--
 A C G T C T A G T A C G C A T G T C A G C G T A G T C A C G T A T A C G G T C A A T G C C G A T A T C G C T G A G T A C C A G T C T G A
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C A C G T A C G T