Information for 14-GACAGACAGGCAGAGA (Motif 34)

A C T G C T G A A T G C C G T A A C T G C G T A A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T G A A T C G C G T A
Reverse Opposite:
A C G T A T G C A G C T A G T C A C G T A C T G A G T C A G T C A C G T A C T G A C G T A G T C A C G T A T C G A G C T A G T C
p-value:1e-3
log p-value:-8.006e+00
Information Content per bp:1.954
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets16.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:1
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GACAGACAGGCAGAGA
TGAGTGACAGSC-----
 A C G T A C T G C T G A A T G C C G T A A C T G C G T A A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T G A A T C G C G T A
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GACAGACAGGCAGAGA
AGGTGNCAGACAG-------
 A C G T A C G T A C G T A C G T A C T G C T G A A T G C C G T A A C T G C G T A A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T G A A T C G C G T A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GACAGACAGGCAGAGA
-CCAGACRSVB-----
 A C T G C T G A A T G C C G T A A C T G C G T A A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T G A A T C G C G T A
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GACAGACAGGCAGAGA
AGGTGHCAGACA--------
 A C G T A C G T A C G T A C G T A C T G C T G A A T G C C G T A A C T G C G T A A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T G A A T C G C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GACAGACAGGCAGAGA
-CCAGACAG-------
 A C T G C T G A A T G C C G T A A C T G C G T A A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T G A A T C G C G T A
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GACAGACAGGCAGAGA
NTGATTGACAGN------
 A C G T A C G T A C T G C T G A A T G C C G T A A C T G C G T A A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T G A A T C G C G T A
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:7
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GACAGACAGGCAGAGA
BTGABTGACAGS------
 A C G T A C G T A C T G C T G A A T G C C G T A A C T G C G T A A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T G A A T C G C G T A
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GACAGACAGGCAGAGA
TGGCAGNCTGCCAG---
 A C G T A C T G C T G A A T G C C G T A A C T G C G T A A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T G A A T C G C G T A
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GACAGACAGGCAGAGA
-BCAGACWA-------
 A C T G C T G A A T G C C G T A A C T G C G T A A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T G A A T C G C G T A
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:10
Score:0.51
Offset:5
Orientation:forward strand
Alignment:GACAGACAGGCAGAGA
-----ACAGGAAGTG-
 A C T G C T G A A T G C C G T A A C T G C G T A A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T G A A T C G C G T A
A C G T A C G T A C G T A C G T A C G T T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G A C G T