Information for 3-AGAGGVRRGGCCAAGC (Motif 4)

C T G A T A C G C G T A C T A G A C T G T C A G T C G A T C G A A T C G A T C G A T G C G T A C C G T A C T G A A C T G T A G C
Reverse Opposite:
A T C G G T A C G A C T A C G T A C T G T A C G A T G C T A G C A G C T A G C T A G T C A G T C A G T C A C G T A T G C A G C T
p-value:1e-12
log p-value:-2.769e+01
Information Content per bp:1.708
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.75%
Number of Background Sequences with motif67.3
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets55.3 +/- 22.1bp
Average Position of motif in Background50.7 +/- 24.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AGAGGVRRGGCCAAGC
-TGGGGAAGGGCM---
 C T G A T A C G C G T A C T A G A C T G T C A G T C G A T C G A A T C G A T C G A T G C G T A C C G T A C T G A A C T G T A G C
A C G T G A C T C T A G C T A G C T A G A C T G T C G A C T G A C T A G C T A G C T A G G T A C G T C A A C G T A C G T A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:2
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGAGGVRRGGCCAAGC
CAAAGGCGTGGCCAG--
 A C G T C T G A T A C G C G T A C T A G A C T G T C A G T C G A T C G A A T C G A T C G A T G C G T A C C G T A C T G A A C T G T A G C
A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.53
Offset:6
Orientation:forward strand
Alignment:AGAGGVRRGGCCAAGC
------CGTGCCAAG-
 C T G A T A C G C G T A C T A G A C T G T C A G T C G A T C G A A T C G A T C G A T G C G T A C C G T A C T G A A C T G T A G C
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:4
Score:0.53
Offset:7
Orientation:forward strand
Alignment:AGAGGVRRGGCCAAGC---
-------AGGTCAAGGTCA
 C T G A T A C G C G T A C T A G A C T G T C A G T C G A T C G A A T C G A T C G A T G C G T A C C G T A C T G A A C T G T A G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:5
Score:0.52
Offset:5
Orientation:forward strand
Alignment:AGAGGVRRGGCCAAGC
-----CAAGGHCANV-
 C T G A T A C G C G T A C T A G A C T G T C A G T C G A T C G A A T C G A T C G A T G C G T A C C G T A C T G A A C T G T A G C
A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.52
Offset:8
Orientation:reverse strand
Alignment:AGAGGVRRGGCCAAGC
--------TGCCAA--
 C T G A T A C G C G T A C T A G A C T G T C A G T C G A T C G A A T C G A T C G A T G C G T A C C G T A C T G A A C T G T A G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:7
Score:0.52
Offset:2
Orientation:forward strand
Alignment:AGAGGVRRGGCCAAGC-
--AAGGKGRCGCAGGCA
 C T G A T A C G C G T A C T A G A C T G T C A G T C G A T C G A A T C G A T C G A T G C G T A C C G T A C T G A A C T G T A G C A C G T
A C G T A C G T T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.52
Offset:5
Orientation:forward strand
Alignment:AGAGGVRRGGCCAAGC
-----AGRGGTCA---
 C T G A T A C G C G T A C T A G A C T G T C A G T C G A T C G A A T C G A T C G A T G C G T A C C G T A C T G A A C T G T A G C
A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.52
Offset:3
Orientation:forward strand
Alignment:AGAGGVRRGGCCAAGC
---GGGGGGGG-----
 C T G A T A C G C G T A C T A G A C T G T C A G T C G A T C G A A T C G A T C G A T G C G T A C C G T A C T G A A C T G T A G C
A C G T A C G T A C G T C T A G A C T G C T A G T C A G T C A G T A C G C T A G A C T G A C G T A C G T A C G T A C G T A C G T

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:AGAGGVRRGGCCAAGC
AGAGGAAGTG------
 C T G A T A C G C G T A C T A G A C T G T C A G T C G A T C G A A T C G A T C G A T G C G T A C C G T A C T G A A C T G T A G C
C G T A T A C G T C G A A C T G A C T G C G T A C G T A T A C G A G C T T A C G A C G T A C G T A C G T A C G T A C G T A C G T