Information for 4-CCAGAGGGCACTC (Motif 12)

A G T C G T A C C G T A A C T G C G T A A C T G A C T G A C T G A G T C C T G A A T G C A C G T A T G C
Reverse Opposite:
A T C G C G T A A T C G A G C T A C T G A G T C A G T C A G T C A C G T A G T C A C G T A C T G A C T G
p-value:1e-10
log p-value:-2.366e+01
Information Content per bp:1.921
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.5 +/- 22.7bp
Average Position of motif in Background34.7 +/- 13.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.69
Offset:-6
Orientation:reverse strand
Alignment:------CCAGAGGGCACTC-
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C C G T A A C T G C G T A A C T G A C T G A C T G A G T C C T G A A T G C A C G T A T G C A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----CCAGAGGGCACTC---
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A G T C G T A C C G T A A C T G C G T A A C T G A C T G A C T G A G T C C T G A A T G C A C G T A T G C A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CCAGAGGGCACTC
-CAAAGGTCAG--
 A G T C G T A C C G T A A C T G C G T A A C T G A C T G A C T G A G T C C T G A A T G C A C G T A T G C
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:4
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------CCAGAGGGCACTC
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C C G T A A C T G C G T A A C T G A C T G A C T G A G T C C T G A A T G C A C G T A T G C
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CCAGAGGGCACTC
GCCTCAGGGCAT--
 A C G T A G T C G T A C C G T A A C T G C G T A A C T G A C T G A C T G A G T C C T G A A T G C A C G T A T G C
A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T A C G T A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CCAGAGGGCACTC
TCACCTCTGGGCAG--
 A C G T A C G T A C G T A G T C G T A C C G T A A C T G C G T A A C T G A C T G A C T G A G T C C T G A A T G C A C G T A T G C
G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G A C G T A C G T

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CCAGAGGGCACTC
TTGCCCTAGGGCAT--
 A C G T A C G T A C G T A G T C G T A C C G T A A C T G C G T A A C T G A C T G A C T G A G T C C T G A A T G C A C G T A T G C
C G A T G A C T T A C G A T G C A G T C A G T C A G C T T C G A T C A G C T A G A T C G A T G C C T G A C G A T A C G T A C G T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCAGAGGGCACTC
TGCCCNNAGGGCA---
 A C G T A C G T A C G T A G T C G T A C C G T A A C T G C G T A A C T G A C T G A C T G A G T C C T G A A T G C A C G T A T G C
G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCAGAGGGCACTC
SCCTSAGGSCAW--
 A C G T A G T C G T A C C G T A A C T G C G T A A C T G A C T G A C T G A G T C C T G A A T G C A C G T A T G C
A T C G A G T C A G T C G A C T A T G C C T G A C T A G A C T G T A C G G T A C C T G A C G A T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CCAGAGGGCACTC
--NGTGGGCAT--
 A G T C G T A C C G T A A C T G C G T A A C T G A C T G A C T G A G T C C T G A A T G C A C G T A T G C
A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T