Information for 9-GCGTCCCTGA (Motif 11)

C T A G T G A C A T C G C G A T A G T C T A G C T A G C C G A T A T C G C T G A
Reverse Opposite:
G A C T T A G C G C T A A T C G A T C G T C A G G C T A T A G C A C T G G A T C
p-value:1e-9
log p-value:-2.264e+01
Information Content per bp:1.666
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif3.77%
Number of Background Sequences with motif476.4
Percentage of Background Sequences with motif1.01%
Average Position of motif in Targets50.5 +/- 25.0bp
Average Position of motif in Background50.0 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----GCGTCCCTGA
GTCATGCHTGRCTGS
 A C G T A C G T A C G T A C G T A C G T C T A G T G A C A T C G C G A T A G T C T A G C T A G C C G A T A T C G C T G A
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GCGTCCCTGA---
-TGACCTTGACCT
 C T A G T G A C A T C G C G A T A G T C T A G C T A G C C G A T A T C G C T G A A C G T A C G T A C G T
A C G T G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:3
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GCGTCCCTGA-
-TGACCTTGAN
 C T A G T G A C A T C G C G A T A G T C T A G C T A G C C G A T A T C G C T G A A C G T
A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:4
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GCGTCCCTGA--
AGGTCTCTAACC
 C T A G T G A C A T C G C G A T A G T C T A G C T A G C C G A T A T C G C T G A A C G T A C G T
C T G A T C A G A C T G C A G T A G T C G A C T A G T C A C G T C G T A G C T A A T G C G A T C

Pax2/MA0067.1/Jaspar

Match Rank:5
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GCGTCCCTGA--
----NCGTGACN
 C T A G T G A C A T C G C G A T A G T C T A G C T A G C C G A T A T C G C T G A A C G T A C G T
A C G T A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.54
Offset:5
Orientation:forward strand
Alignment:GCGTCCCTGA-
-----GCTGTG
 C T A G T G A C A T C G C G A T A G T C T A G C T A G C C G A T A T C G C T G A A C G T
A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:7
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GCGTCCCTGA---
-TGACCTTGACCT
 C T A G T G A C A T C G C G A T A G T C T A G C T A G C C G A T A T C G C T G A A C G T A C G T A C G T
A C G T G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCGTCCCTGA
AAGACCCYYN
 C T A G T G A C A T C G C G A T A G T C T A G C T A G C C G A T A T C G C T G A
T C G A T G C A A C T G G T C A A G T C A G T C A G T C A G T C A G C T T G A C

PB0179.1_Sp100_2/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GCGTCCCTGA----
TCCGTCGCTTAAAAG
 A C G T C T A G T G A C A T C G C G A T A G T C T A G C T A G C C G A T A T C G C T G A A C G T A C G T A C G T A C G T
A G C T A T G C G A T C T C A G G C A T T G A C A C T G G A T C A C G T C A G T G C T A C G T A G C T A C G T A A C T G

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GCGTCCCTGA-
-TGACCTTGAV
 C T A G T G A C A T C G C G A T A G T C T A G C T A G C C G A T A T C G C T G A A C G T
A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A