Information for 19-ARAGRATTTTTATTAC (Motif 31)

C G T A C T A G G T C A C A T G C T A G G T C A A C G T A C G T C G A T C G A T C G A T G C T A C G A T A C G T G T C A G A T C
Reverse Opposite:
C A T G C A G T C G T A C G T A C G A T C G T A C G T A G C T A C G T A T C G A A C G T A G T C G A T C C A G T A G T C G A C T
p-value:1e-7
log p-value:-1.761e+01
Information Content per bp:1.671
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif2.00%
Number of Background Sequences with motif101.8
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets45.5 +/- 25.8bp
Average Position of motif in Background52.4 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0046.1_Hoxa10/Jaspar

Match Rank:1
Score:0.78
Offset:3
Orientation:reverse strand
Alignment:ARAGRATTTTTATTAC---
---TNAATTTTATTACCTN
 C G T A C T A G G T C A C A T G C T A G G T C A A C G T A C G T C G A T C G A T C G A T G C T A C G A T A C G T G T C A G A T C A C G T A C G T A C G T
A C G T A C G T A C G T G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A

HOXA10/MA0899.1/Jaspar

Match Rank:2
Score:0.78
Offset:6
Orientation:reverse strand
Alignment:ARAGRATTTTTATTAC-
------NTTTTATTACN
 C G T A C T A G G T C A C A T G C T A G G T C A A C G T A C G T C G A T C G A T C G A T G C T A C G A T A C G T G T C A G A T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

PH0013.1_Cdx2/Jaspar

Match Rank:3
Score:0.76
Offset:4
Orientation:reverse strand
Alignment:ARAGRATTTTTATTAC----
----NAATTTTATTACCNNN
 C G T A C T A G G T C A C A T G C T A G G T C A A C G T A C G T C G A T C G A T C G A T G C T A C G A T A C G T G T C A G A T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

Hoxd9/MA0913.1/Jaspar

Match Rank:4
Score:0.76
Offset:6
Orientation:reverse strand
Alignment:ARAGRATTTTTATTAC
------TTTTTATTGC
 C G T A C T A G G T C A C A T G C T A G G T C A A C G T A C G T C G A T C G A T C G A T G C T A C G A T A C G T G T C A G A T C
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:5
Score:0.74
Offset:6
Orientation:reverse strand
Alignment:ARAGRATTTTTATTAC
------NTTTTATGAC
 C G T A C T A G G T C A C A T G C T A G G T C A A C G T A C G T C G A T C G A T C G A T G C T A C G A T A C G T G T C A G A T C
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

PH0012.1_Cdx1/Jaspar

Match Rank:6
Score:0.74
Offset:4
Orientation:reverse strand
Alignment:ARAGRATTTTTATTAC----
----NAATTTTATTACCTNN
 C G T A C T A G G T C A C A T G C T A G G T C A A C G T A C G T C G A T C G A T C G A T G C T A C G A T A C G T G T C A G A T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.73
Offset:7
Orientation:reverse strand
Alignment:ARAGRATTTTTATTAC
-------TTTTATTGC
 C G T A C T A G G T C A C A T G C T A G G T C A A C G T A C G T C G A T C G A T C G A T G C T A C G A T A C G T G T C A G A T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

PH0075.1_Hoxd10/Jaspar

Match Rank:8
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:ARAGRATTTTTATTAC---
--NTNAATTTTATTGNATT
 C G T A C T A G G T C A C A T G C T A G G T C A A C G T A C G T C G A T C G A T C G A T G C T A C G A T A C G T G T C A G A T C A C G T A C G T A C G T
A C G T A C G T C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:9
Score:0.70
Offset:6
Orientation:reverse strand
Alignment:ARAGRATTTTTATTAC
------NTTTTATTGG
 C G T A C T A G G T C A C A T G C T A G G T C A A C G T A C G T C G A T C G A T C G A T G C T A C G A T A C G T G T C A G A T C
A C G T A C G T A C G T A C G T A C G T A C G T C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G

PH0064.1_Hoxb9/Jaspar

Match Rank:10
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:ARAGRATTTTTATTAC---
---NGANTTTTATGGCTCN
 C G T A C T A G G T C A C A T G C T A G G T C A A C G T A C G T C G A T C G A T C G A T G C T A C G A T A C G T G T C A G A T C A C G T A C G T A C G T
A C G T A C G T A C G T G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T