Information for 11-CAGCCATTAAACK (Motif 12)

A G T C C G T A A C T G A T G C G A T C C G T A G C A T C G A T C G T A G T C A T C G A A G T C C A G T
Reverse Opposite:
G T C A T C A G A C G T A C G T G C A T G C T A C G T A G C A T C T A G T A C G G T A C C G A T C T A G
p-value:1e-12
log p-value:-2.827e+01
Information Content per bp:1.684
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif2.00%
Number of Background Sequences with motif39.1
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets39.4 +/- 27.7bp
Average Position of motif in Background51.6 +/- 24.8bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0056.1_Hoxa9/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CAGCCATTAAACK---
ACGGCCATAAAATTAAT
 A C G T A G T C C G T A A C T G A T G C G A T C C G T A G C A T C G A T C G T A G T C A T C G A A G T C C A G T A C G T A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

PH0064.1_Hoxb9/Jaspar

Match Rank:2
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CAGCCATTAAACK--
AGAGCCATAAAATTCG
 A C G T A G T C C G T A A C T G A T G C G A T C C G T A G C A T C G A T C G T A G T C A T C G A A G T C C A G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:3
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CAGCCATTAAACK
-NGCAATTAAA--
 A G T C C G T A A C T G A T G C G A T C C G T A G C A T C G A T C G T A G T C A T C G A A G T C C A G T
A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:4
Score:0.69
Offset:5
Orientation:forward strand
Alignment:CAGCCATTAAACK
-----ATTAAA--
 A G T C C G T A A C T G A T G C G A T C C G T A G C A T C G A T C G T A G T C A T C G A A G T C C A G T
A C G T A C G T A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:5
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CAGCCATTAAACK
--GCAATAAAAA-
 A G T C C G T A A C T G A T G C G A T C C G T A G C A T C G A T C G T A G T C A T C G A A G T C C A G T
A C G T A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CAGCCATTAAACK
-GGCCATTAAC--
 A G T C C G T A A C T G A T G C G A T C C G T A G C A T C G A T C G T A G T C A T C G A A G T C C A G T
A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:7
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CAGCCATTAAACK
-GGTAATAAAAA-
 A G T C C G T A A C T G A T G C G A T C C G T A G C A T C G A T C G T A G T C A T C G A A G T C C A G T
A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CAGCCATTAAACK-
GGAGGTCATTAATTAT
 A C G T A C G T A G T C C G T A A C T G A T G C G A T C C G T A G C A T C G A T C G T A G T C A T C G A A G T C C A G T A C G T
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

CDX2/MA0465.1/Jaspar

Match Rank:9
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CAGCCATTAAACK
AAGCCATAAAA--
 A G T C C G T A A C T G A T G C G A T C C G T A G C A T C G A T C G T A G T C A T C G A A G T C C A G T
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T

MYBL2/MA0777.1/Jaspar

Match Rank:10
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CAGCCATTAAACK---
-AACCGTTAAACGGTC
 A G T C C G T A A C T G A T G C G A T C C G T A G C A T C G A T C G T A G T C A T C G A A G T C C A G T A C G T A C G T A C G T
A C G T C T G A C T G A T G A C T A G C C T A G C A G T A G C T C G T A T G C A G C T A T G A C A T C G A T C G G A C T G A T C