Information for 1-MCAATAAAGTTTT (Motif 1)

G T A C G T A C C G T A C G T A A C G T C G T A C G T A C G T A C T A G G A C T C G A T C A G T G A C T
Reverse Opposite:
C G T A G T C A C G T A C T G A A G T C C G A T A C G T A C G T G T C A A C G T G C A T C A T G C A T G
p-value:1e-72
log p-value:-1.662e+02
Information Content per bp:1.782
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif4.17%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.2 +/- 23.9bp
Average Position of motif in Background18.7 +/- 4.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0075.1_Hoxd10/Jaspar

Match Rank:1
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---MCAATAAAGTTTT-
AATGCAATAAAATTTAT
 A C G T A C G T A C G T G T A C G T A C C G T A C G T A A C G T C G T A C G T A C G T A C T A G G A C T C G A T C A G T G A C T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

PH0078.1_Hoxd13/Jaspar

Match Rank:2
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---MCAATAAAGTTTT
CTACCAATAAAATTCT
 A C G T A C G T A C G T G T A C G T A C C G T A C G T A A C G T C G T A C G T A C G T A C T A G G A C T C G A T C A G T G A C T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

PH0057.1_Hoxb13/Jaspar

Match Rank:3
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---MCAATAAAGTTTT
AACCCAATAAAATTCG
 A C G T A C G T A C G T G T A C G T A C C G T A C G T A A C G T C G T A C G T A C G T A C T A G G A C T C G A T C A G T G A C T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

HOXA13/MA0650.1/Jaspar

Match Rank:4
Score:0.71
Offset:0
Orientation:forward strand
Alignment:MCAATAAAGTTTT
CCAATAAAAA---
 G T A C G T A C C G T A C G T A A C G T C G T A C G T A C G T A C T A G G A C T C G A T C A G T G A C T
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:5
Score:0.70
Offset:0
Orientation:forward strand
Alignment:MCAATAAAGTTTT
CCAATAAAAC---
 G T A C G T A C C G T A C G T A A C G T C G T A C G T A C G T A C T A G G A C T C G A T C A G T G A C T
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:6
Score:0.69
Offset:0
Orientation:forward strand
Alignment:MCAATAAAGTTTT
GCAATAAAA----
 G T A C G T A C C G T A C G T A A C G T C G T A C G T A C G T A C T A G G A C T C G A T C A G T G A C T
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:7
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----MCAATAAAGTTTT
AAAGGTAATAAAATTT-
 A C G T A C G T A C G T A C G T G T A C G T A C C G T A C G T A A C G T C G T A C G T A C G T A C T A G G A C T C G A T C A G T G A C T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:8
Score:0.68
Offset:0
Orientation:forward strand
Alignment:MCAATAAAGTTTT
CCAATAAAAA---
 G T A C G T A C C G T A C G T A A C G T C G T A C G T A C G T A C T A G G A C T C G A T C A G T G A C T
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-MCAATAAAGTTTT
NCYAATAAAA----
 A C G T G T A C G T A C C G T A C G T A A C G T C G T A C G T A C G T A C T A G G A C T C G A T C A G T G A C T
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--MCAATAAAGTTTT
AAGCCATAAAA----
 A C G T A C G T G T A C G T A C C G T A C G T A A C G T C G T A C G T A C G T A C T A G G A C T C G A T C A G T G A C T
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T A C G T