Information for 3-CCTSACCTGGCTAGTT (Motif 4)

A T G C A G T C A C G T A T C G C G T A A T G C T A G C A C G T A T C G T C A G A G T C A C G T C T G A C T A G C G A T A C G T
Reverse Opposite:
G T C A C G T A A G T C A G C T C G T A T A C G A G T C T A G C G T C A A T C G A T C G A C G T A T G C C G T A A C T G A T C G
p-value:1e-13
log p-value:-3.154e+01
Information Content per bp:1.745
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.1 +/- 25.1bp
Average Position of motif in Background41.5 +/- 18.1bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZEB1/MA0103.2/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCTSACCTGGCTAGTT
CCTCACCTG-------
 A T G C A G T C A C G T A T C G C G T A A T G C T A G C A C G T A T C G T C A G A G T C A C G T C T G A C T A G C G A T A C G T
T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CCTSACCTGGCTAGTT
NNACTTACCTN-------
 A C G T A C G T A T G C A G T C A C G T A T C G C G T A A T G C T A G C A C G T A T C G T C A G A G T C A C G T C T G A C T A G C G A T A C G T
C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:3
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CCTSACCTGGCTAGTT
--TGACCTARTT----
 A T G C A G T C A C G T A T C G C G T A A T G C T A G C A C G T A T C G T C A G A G T C A C G T C T G A C T A G C G A T A C G T
A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CCTSACCTGGCTAGTT
--TGACCTTGAT----
 A T G C A G T C A C G T A T C G C G T A A T G C T A G C A C G T A T C G T C A G A G T C A C G T C T G A C T A G C G A T A C G T
A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CCTSACCTGGCTAGTT
--TGACCTYA------
 A T G C A G T C A C G T A T C G C G T A A T G C T A G C A C G T A T C G T C A G A G T C A C G T C T G A C T A G C G A T A C G T
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CCTSACCTGGCTAGTT
NNNNTGACCCGGCGCG--
 A C G T A C G T A T G C A G T C A C G T A T C G C G T A A T G C T A G C A C G T A T C G T C A G A G T C A C G T C T G A C T A G C G A T A C G T
C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CCTSACCTGGCTAGTT
-TTGACCTANTTATN-
 A T G C A G T C A C G T A T C G C G T A A T G C T A G C A C G T A T C G T C A G A G T C A C G T C T G A C T A G C G A T A C G T
A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CCTSACCTGGCTAGTT
--TGACCT--------
 A T G C A G T C A C G T A T C G C G T A A T G C T A G C A C G T A T C G T C A G A G T C A C G T C T G A C T A G C G A T A C G T
A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CCTSACCTGGCTAGTT
-NNCACCTGNN-----
 A T G C A G T C A C G T A T C G C G T A A T G C T A G C A C G T A T C G T C A G A G T C A C G T C T G A C T A G C G A T A C G T
A C G T A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:10
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CCTSACCTGGCTAGTT
--TGACCYCT------
 A T G C A G T C A C G T A T C G C G T A A T G C T A G C A C G T A T C G T C A G A G T C A C G T C T G A C T A G C G A T A C G T
A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T