Information for 2-TTTTATTGCCACT (Motif 11)

A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C T G A G T C A G T C G C T A A G T C A C G T
Reverse Opposite:
C G T A A C T G C A G T C T A G A C T G G T A C C G T A C G T A A C G T C G T A C G T A C G T A C G T A
p-value:1e-11
log p-value:-2.739e+01
Information Content per bp:1.914
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.8 +/- 22.3bp
Average Position of motif in Background49.8 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0013.1_Cdx2/Jaspar

Match Rank:1
Score:0.81
Offset:-3
Orientation:reverse strand
Alignment:---TTTTATTGCCACT
NAATTTTATTACCNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C T G A G T C A G T C G C T A A G T C A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

HOXA10/MA0899.1/Jaspar

Match Rank:2
Score:0.80
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTGCCACT
NTTTTATTACN---
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C T G A G T C A G T C G C T A A G T C A C G T
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:3
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:TTTTATTGCCACT
TTTTATGGCTN--
 A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C T G A G T C A G T C G C T A A G T C A C G T
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTGCCACT
NTTTTATGAC----
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C T G A G T C A G T C G C T A A G T C A C G T
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:5
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:TTTTATTGCCACT
TTTTATTGC----
 A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C T G A G T C A G T C G C T A A G T C A C G T
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:6
Score:0.78
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATTGCCACT
NGANTTTTATGGCTCN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C T G A G T C A G T C G C T A A G T C A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:7
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTGCCACT
TTTTTATTGC----
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C T G A G T C A G T C G C T A A G T C A C G T
C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C A C G T A C G T A C G T A C G T

PH0046.1_Hoxa10/Jaspar

Match Rank:8
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATTGCCACT
TNAATTTTATTACCTN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C T G A G T C A G T C G C T A A G T C A C G T
G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A A C G T

PH0012.1_Cdx1/Jaspar

Match Rank:9
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---TTTTATTGCCACT
NAATTTTATTACCTNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C T G A G T C A G T C G C T A A G T C A C G T
C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A

HOXD13/MA0909.1/Jaspar

Match Rank:10
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTGCCACT
NTTTTATTGG----
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C T G A G T C A G T C G C T A A G T C A C G T
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T A C G T A C G T