Information for 2-CHGGGAGAGGGCA (Motif 4)

A T G C G A T C C T A G A C T G A C T G C G T A A C T G C G T A A C T G A C T G A C T G A G T C C G T A
Reverse Opposite:
C G A T A C T G G T A C A G T C A G T C A C G T G T A C C G A T A G T C A G T C A G T C C T A G A T C G
p-value:1e-11
log p-value:-2.604e+01
Information Content per bp:1.848
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif10.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets52.5 +/- 15.6bp
Average Position of motif in Background46.9 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.69
Offset:5
Orientation:forward strand
Alignment:CHGGGAGAGGGCA
-----TRAGGTCA
 A T G C G A T C C T A G A C T G A C T G C G T A A C T G C G T A A C T G A C T G A C T G A G T C C G T A
A C G T A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CHGGGAGAGGGCA
-TGGGGAAGGGCM
 A T G C G A T C C T A G A C T G A C T G C G T A A C T G C G T A A C T G A C T G A C T G A G T C C G T A
A C G T G A C T C T A G C T A G C T A G A C T G T C G A C T G A C T A G C T A G C T A G G T A C G T C A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:3
Score:0.66
Offset:5
Orientation:forward strand
Alignment:CHGGGAGAGGGCA
-----AGRGGTCA
 A T G C G A T C C T A G A C T G A C T G C G T A A C T G C G T A A C T G A C T G A C T G A G T C C G T A
A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:4
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CHGGGAGAGGGCA
-ANGNAAAGGTCA
 A T G C G A T C C T A G A C T G A C T G C G T A A C T G C G T A A C T G A C T G A C T G A G T C C G T A
A C G T C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.62
Offset:7
Orientation:forward strand
Alignment:CHGGGAGAGGGCA
-------AGGTCA
 A T G C G A T C C T A G A C T G A C T G C G T A A C T G C G T A A C T G A C T G A C T G A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:6
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CHGGGAGAGGGCA-
RGGTCADNNAGAGGTCAV
 A C G T A C G T A C G T A C G T A T G C G A T C C T A G A C T G A C T G C G T A A C T G C G T A A C T G A C T G A C T G A G T C C G T A A C G T
C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C

NR4A2/MA0160.1/Jaspar

Match Rank:7
Score:0.62
Offset:6
Orientation:forward strand
Alignment:CHGGGAGAGGGCA-
------AAGGTCAC
 A T G C G A T C C T A G A C T G A C T G C G T A A C T G C G T A A C T G A C T G A C T G A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

PB0118.1_Esrra_2/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CHGGGAGAGGGCA-----
-GGCGAGGGGTCAAGGGC
 A T G C G A T C C T A G A C T G A C T G C G T A A C T G C G T A A C T G A C T G A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

RARA::RXRA/MA0159.1/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CHGGGAGAGGGCA
AGGTCACGGAGAGGTCA
 A C G T A C G T A C G T A C G T A T G C G A T C C T A G A C T G A C T G C G T A A C T G C G T A A C T G A C T G A C T G A G T C C G T A
C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A

NR2F1/MA0017.2/Jaspar

Match Rank:10
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CHGGGAGAGGGCA----
----CAAAGGTCAAGGG
 A T G C G A T C C T A G A C T G A C T G C G T A A C T G C G T A A C T G A C T G A C T G A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G