Information for 3-CGAGTCACGT (Motif 3)

G T A C A T C G C T G A A C T G C G A T A G T C C G T A A G T C A C T G A C G T
Reverse Opposite:
C G T A A G T C C T A G A C G T A C T G C G T A A G T C A G C T A T G C C A T G
p-value:1e-13
log p-value:-3.007e+01
Information Content per bp:1.862
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.39%
Number of Background Sequences with motif25.1
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets55.7 +/- 26.7bp
Average Position of motif in Background50.0 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arntl/MA0603.1/Jaspar

Match Rank:1
Score:0.79
Offset:2
Orientation:forward strand
Alignment:CGAGTCACGT--
--GGTCACGTGC
 G T A C A T C G C T G A A C T G C G A T A G T C C G T A A G T C A C T G A C G T A C G T A C G T
A C G T A C G T C A T G T C A G C A G T G T A C G C T A A G T C C T A G G A C T C A T G G A T C

E-box(bHLH)/Promoter/Homer

Match Rank:2
Score:0.78
Offset:0
Orientation:forward strand
Alignment:CGAGTCACGT--
CCGGTCACGTGA
 G T A C A T C G C T G A A C T G C G A T A G T C C G T A A G T C A C T G A C G T A C G T A C G T
A T G C A T G C A T C G T A C G A G C T A G T C G C T A A G T C T C A G G A C T A C T G T C G A

Pax2/MA0067.1/Jaspar

Match Rank:3
Score:0.77
Offset:2
Orientation:forward strand
Alignment:CGAGTCACGT
--AGTCACGC
 G T A C A T C G C T G A A C T G C G A T A G T C C G T A A G T C A C T G A C G T
A C G T A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G

USF1/MA0093.2/Jaspar

Match Rank:4
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:CGAGTCACGT---
--GGTCACGTGGC
 G T A C A T C G C T G A A C T G C G A T A G T C C G T A A G T C A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C T A G C T A G G A C T A G T C C G T A A G T C T C A G C G A T A C T G T C A G A G T C

TFEB/MA0692.1/Jaspar

Match Rank:5
Score:0.76
Offset:3
Orientation:reverse strand
Alignment:CGAGTCACGT---
---GTCACGTGAT
 G T A C A T C G C T G A A C T G C G A T A G T C C G T A A G T C A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C A G A C G T T G A C C G T A A G T C T C A G C A G T C A T G T C G A A G C T

BHLHE41/MA0636.1/Jaspar

Match Rank:6
Score:0.76
Offset:3
Orientation:reverse strand
Alignment:CGAGTCACGT---
---GTCACGTGAC
 G T A C A T C G C T G A A C T G C G A T A G T C C G T A A G T C A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C A G C A G T A G T C C G T A A G T C C T A G A G C T A T C G G T C A A G T C

TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer

Match Rank:7
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:CGAGTCACGT---
-BRGTCACGTGAC
 G T A C A T C G C T G A A C T G C G A T A G T C C G T A A G T C A C T G A C G T A C G T A C G T A C G T
A C G T A C T G C T A G T C A G A G C T T A G C G T C A A G T C T C A G G C A T T A C G T C G A A G T C

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:8
Score:0.75
Offset:3
Orientation:forward strand
Alignment:CGAGTCACGT-
---GHCACGTG
 G T A C A T C G C T G A A C T G C G A T A G T C C G T A A G T C A C T G A C G T A C G T
A C G T A C G T A C G T C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G

USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.75
Offset:2
Orientation:forward strand
Alignment:CGAGTCACGT--
--GGTCACGTGA
 G T A C A T C G C T G A A C T G C G A T A G T C C G T A A G T C A C T G A C G T A C G T A C G T
A C G T A C G T T A C G T C A G A G C T A T G C C G T A A G T C T C A G A C G T A C T G T C G A

TFE3/MA0831.1/Jaspar

Match Rank:10
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:CGAGTCACGT---
---GTCACGTGNT
 G T A C A T C G C T G A A C T G C G A T A G T C C G T A A G T C A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G A C G T T G A C C G T A A G T C T C A G C G A T A T C G T C G A A G C T