Information for 7-AATTTATGGC (Motif 20)

G C T A T C G A A C G T A G C T C A G T C G T A A C G T C A T G A C T G G A T C
Reverse Opposite:
C T A G A G T C G T A C G T C A A C G T G T C A C T G A C G T A A G C T C A G T
p-value:1e-9
log p-value:-2.207e+01
Information Content per bp:1.832
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.94%
Number of Background Sequences with motif110.0
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets49.8 +/- 26.6bp
Average Position of motif in Background54.6 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:1
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-AATTTATGGC-
TGATTTATGGCC
 A C G T G C T A T C G A A C G T A G C T C A G T C G T A A C G T C A T G A C T G G A T C A C G T
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

CDX2/MA0465.1/Jaspar

Match Rank:2
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:AATTTATGGC--
-TTTTATGGCTN
 G C T A T C G A A C G T A G C T C A G T C G T A A C G T C A T G A C T G G A T C A C G T A C G T
A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

Hoxc9/MA0485.1/Jaspar

Match Rank:3
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--AATTTATGGC-
NTGATTTATGGCC
 A C G T A C G T G C T A T C G A A C G T A G C T C A G T C G T A A C G T C A T G A C T G G A T C A C G T
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:4
Score:0.80
Offset:-1
Orientation:reverse strand
Alignment:-AATTTATGGC-
DGWTTTATGRCN
 A C G T G C T A T C G A A C G T A G C T C A G T C G T A A C G T C A T G A C T G G A T C A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

CDX1/MA0878.1/Jaspar

Match Rank:5
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:AATTTATGGC
-TTTTATTGC
 G C T A T C G A A C G T A G C T C A G T C G T A A C G T C A T G A C T G G A T C
A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:AATTTATGGC
NTTTTATGAC
 G C T A T C G A A C G T A G C T C A G T C G T A A C G T C A T G A C T G G A T C
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:7
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-AATTTATGGC-
TGATTTATGGCC
 A C G T G C T A T C G A A C G T A G C T C A G T C G T A A C G T C A T G A C T G G A T C A C G T
C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

PH0013.1_Cdx2/Jaspar

Match Rank:8
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--AATTTATGGC----
NAATTTTATTACCNNN
 A C G T A C G T G C T A T C G A A C G T A G C T C A G T C G T A A C G T C A T G A C T G G A T C A C G T A C G T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

PH0056.1_Hoxa9/Jaspar

Match Rank:9
Score:0.78
Offset:-4
Orientation:reverse strand
Alignment:----AATTTATGGC---
ANTAATTTTATGGCCGN
 A C G T A C G T A C G T A C G T G C T A T C G A A C G T A G C T C A G T C G T A A C G T C A T G A C T G G A T C A C G T A C G T A C G T
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T

PH0064.1_Hoxb9/Jaspar

Match Rank:10
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---AATTTATGGC---
NGANTTTTATGGCTCN
 A C G T A C G T A C G T G C T A T C G A A C G T A G C T C A G T C G T A A C G T C A T G A C T G G A T C A C G T A C G T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T