Information for 11-GCTKTTMYAGACK (Motif 16)

A C T G A G T C A C G T A C G T A C G T A C G T G T C A A G C T C T G A A C T G C G T A A G T C A C G T
Reverse Opposite:
G T C A A C T G A C G T A G T C A G C T C T G A A C G T G T C A C G T A G T C A C G T A A C T G A G T C
p-value:1e-10
log p-value:-2.431e+01
Information Content per bp:1.875
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.3 +/- 23.6bp
Average Position of motif in Background58.0 +/- 16.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCTKTTMYAGACK
CCTTTTATAGNC-
 A C T G A G T C A C G T A C G T A C G T A C G T G T C A A G C T C T G A A C T G C G T A A G T C A C G T
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:GCTKTTMYAGACK---
------CCAGACRSVB
 A C T G A G T C A C G T A C G T A C G T A C G T G T C A A G C T C T G A A C T G C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCTKTTMYAGACK-----
-CAAATCCAGACATCACA
 A C T G A G T C A C G T A C G T A C G T A C G T G T C A A G C T C T G A A C T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

SMAD3/MA0795.1/Jaspar

Match Rank:4
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GCTKTTMYAGACK
---TGTCTAGACG
 A C T G A G T C A C G T A C G T A C G T A C G T G T C A A G C T C T G A A C T G C G T A A G T C A C G T
A C G T A C G T A C G T C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:GCTKTTMYAGACK-
------CCAGACAG
 A C T G A G T C A C G T A C G T A C G T A C G T G T C A A G C T C T G A A C T G C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

TBP/MA0108.2/Jaspar

Match Rank:6
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----GCTKTTMYAGACK
NNNNNNCTTTTATAN---
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C G T A C G T A C G T G T C A A G C T C T G A A C T G C G T A A G T C A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:GCTKTTMYAGACK-
------BCAGACWA
 A C T G A G T C A C G T A C G T A C G T A C G T G T C A A G C T C T G A A C T G C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

POL012.1_TATA-Box/Jaspar

Match Rank:8
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----GCTKTTMYAGACK
NNNNNNCTTTTATAN---
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C G T A C G T A C G T G T C A A G C T C T G A A C T G C G T A A G T C A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCTKTTMYAGACK
TKCTGTTCCA----
 A C G T A C T G A G T C A C G T A C G T A C G T A C G T G T C A A G C T C T G A A C T G C G T A A G T C A C G T
A C G T C A G T T A G C A G C T T A C G C G A T A C G T A G T C G T A C G T C A A C G T A C G T A C G T A C G T

Rhox11/MA0629.1/Jaspar

Match Rank:10
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----GCTKTTMYAGACK
AAGACGCTGTAAAGCGA-
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C G T A C G T A C G T G T C A A G C T C T G A A C T G C G T A A G T C A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A A C G T