Information for 2-AAATTGGCAG (Motif 2)

T C G A C T G A T C G A C G A T G C A T C T A G C A T G T G A C T C G A A C T G
Reverse Opposite:
G T A C A G C T A C T G G T A C A G T C C G T A G C T A A G C T G A C T A G C T
p-value:1e-12
log p-value:-2.775e+01
Information Content per bp:1.682
Number of Target Sequences with motif50.0
Percentage of Target Sequences with motif5.97%
Number of Background Sequences with motif886.2
Percentage of Background Sequences with motif1.83%
Average Position of motif in Targets50.0 +/- 27.3bp
Average Position of motif in Background49.6 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:AAATTGGCAG-
-NNTTGGCANN
 T C G A C T G A T C G A C G A T G C A T C T A G C A T G T G A C T C G A A C T G A C G T
A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.75
Offset:3
Orientation:forward strand
Alignment:AAATTGGCAG
---TTGGCA-
 T C G A C T G A T C G A C G A T G C A T C T A G C A T G T G A C T C G A A C T G
A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:AAATTGGCAG-
--NTTGGCANN
 T C G A C T G A T C G A C G A T G C A T C T A G C A T G T G A C T C G A A C T G A C G T
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:AAATTGGCAG
--CTTGGCAA
 T C G A C T G A T C G A C G A T G C A T C T A G C A T G T G A C T C G A A C T G
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.69
Offset:3
Orientation:forward strand
Alignment:AAATTGGCAG-
---TTGACAGC
 T C G A C T G A T C G A C G A T G C A T C T A G C A T G T G A C T C G A A C T G A C G T
A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

PH0141.1_Pknox2/Jaspar

Match Rank:6
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AAATTGGCAG------
NNATTGACAGGTGCTT
 T C G A C T G A T C G A C G A T G C A T C T A G C A T G T G A C T C G A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T

YY1/MA0095.2/Jaspar

Match Rank:7
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AAATTGGCAG-
CAAGATGGCGGC
 A C G T T C G A C T G A T C G A C G A T G C A T C T A G C A T G T G A C T C G A A C T G A C G T
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

PH0169.1_Tgif1/Jaspar

Match Rank:8
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AAATTGGCAG------
GATATTGACAGCTGCGT
 A C G T T C G A C T G A T C G A C G A T G C A T C T A G C A T G T G A C T C G A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C A G T C T G A A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C T A G A T G C A C G T T A C G T A G C A C T G C G A T

YY1(Zf)/Promoter/Homer

Match Rank:9
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AAATTGGCAG-
CAAGATGGCGGC
 A C G T T C G A C T G A T C G A C G A T G C A T C T A G C A T G T G A C T C G A A C T G A C G T
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AAATTGGCAG
-ARNTGACA-
 T C G A C T G A T C G A C G A T G C A T C T A G C A T G T G A C T C G A A C T G
A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T