Information for 2-GACTTTGNHCYCT (Motif 6)

T A C G T G C A T A G C G A C T A C G T C A G T C A T G A G C T G T C A G A T C G A T C A G T C G C A T
Reverse Opposite:
C G T A T C A G C T A G C T A G C A G T T C G A G T A C G T C A T G C A C T G A A T C G A C G T A T G C
p-value:1e-23
log p-value:-5.397e+01
Information Content per bp:1.485
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.73%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets49.5 +/- 24.6bp
Average Position of motif in Background43.8 +/- 5.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--GACTTTGNHCYCT
TGGACTTTGNNCTCN
 A C G T A C G T T A C G T G C A T A G C G A C T A C G T C A G T C A T G A G C T G T C A G A T C G A T C A G T C G C A T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--GACTTTGNHCYCT-
TGGACTTTGNNCTNTG
 A C G T A C G T T A C G T G C A T A G C G A C T A C G T C A G T C A T G A G C T G T C A G A T C G A T C A G T C G C A T A C G T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

Hnf4a/MA0114.3/Jaspar

Match Rank:3
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----GACTTTGNHCYCT
ATTGGACTTTGACCCC-
 A C G T A C G T A C G T A C G T T A C G T G C A T A G C G A C T A C G T C A G T C A T G A G C T G T C A G A T C G A T C A G T C G C A T
C T G A A G C T G A C T T C A G T C A G T G C A T G A C A G C T G A C T A G C T T C A G G T C A G T A C G A T C A G T C A G T C A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GACTTTGNHCYCT
TGACCTTGACCT--
 A C G T T A C G T G C A T A G C G A C T A C G T C A G T C A T G A G C T G T C A G A T C G A T C A G T C G C A T
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GACTTTGNHCYCT----
NNNNTTGACCCCTNNNN
 T A C G T G C A T A G C G A C T A C G T C A G T C A T G A G C T G T C A G A T C G A T C A G T C G C A T A C G T A C G T A C G T A C G T
C A T G T A G C T A G C G A T C C G A T A G C T T C A G G C T A G T A C G A T C A G T C A G T C C G A T T G A C T A C G G T A C A T G C

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GACTTTGNHCYCT
TGACCTTGACCT--
 A C G T T A C G T G C A T A G C G A C T A C G T C A G T C A T G A G C T G T C A G A T C G A T C A G T C G C A T
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GACTTTGNHCYCT
GCTGACCTTGAACTN-
 A C G T A C G T A C G T T A C G T G C A T A G C G A C T A C G T C A G T C A T G A G C T G T C A G A T C G A T C A G T C G C A T
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GACTTTGNHCYCT
-YCTTTGTTCC--
 T A C G T G C A T A G C G A C T A C G T C A G T C A T G A G C T G T C A G A T C G A T C A G T C G C A T
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:9
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------GACTTTGNHCYCT
NNATTGGACTTTNGNN---
 A C G T A C G T A C G T A C G T A C G T A C G T T A C G T G C A T A G C G A C T A C G T C A G T C A T G A G C T G T C A G A T C G A T C A G T C G C A T
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C A C G T A C G T A C G T

RXRB/MA0855.1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GACTTTGNHCYCT
TGACCTTTGACCCC
 A C G T T A C G T G C A T A G C G A C T A C G T C A G T C A T G A G C T G T C A G A T C G A T C A G T C G C A T
A G C T T C A G T G C A G T A C G T A C A G C T G A C T G A C T T C A G T G C A G T A C G A T C A G T C A G T C