Information for 25-GCAGGTTAGC (Motif 38)

A C T G A G T C C G T A A C T G A C T G A C G T A C G T C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T C G T A C G T A A G T C A G T C A C G T A C T G A G T C
p-value:1e-6
log p-value:-1.539e+01
Information Content per bp:1.530
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.12%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets46.7 +/- 25.5bp
Average Position of motif in Background69.6 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZEB1/MA0103.2/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GCAGGTTAGC
-CAGGTGAGG
 A C T G A G T C C G T A A C T G A C T G A C G T A C G T C G T A A C T G A G T C
A C G T A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GCAGGTTAGC--
-CAGGTAAGTAT
 A C T G A G T C C G T A A C T G A C T G A C G T A C G T C G T A A C T G A G T C A C G T A C G T
A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GCAGGTTAGC
VCAGGTRDRY
 A C T G A G T C C G T A A C T G A C T G A C G T A C G T C G T A A C T G A G T C
T G C A G T A C C G T A A T C G A C T G A C G T C T A G C G A T T C G A A G T C

SNAI2/MA0745.1/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCAGGTTAGC
AACAGGTGT--
 A C G T A C T G A G T C C G T A A C T G A C T G A C G T A C G T C G T A A C T G A G T C
C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCAGGTTAGC
SDGCAGGTGCNS
 A C G T A C G T A C T G A G T C C G T A A C T G A C T G A C G T A C G T C G T A A C T G A G T C
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGTTAGC
NNCAGGTGNN-
 A C G T A C T G A G T C C G T A A C T G A C T G A C G T A C G T C G T A A C T G A G T C
C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGTTAGC-----
NGTAGGTTGGCATNNN
 A C G T A C T G A G T C C G T A A C T G A C T G A C G T A C G T C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

TCF4/MA0830.1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGTTAGC
NNCAGGTGCG-
 A C G T A C T G A G T C C G T A A C T G A C T G A C G T A C G T C G T A A C T G A G T C
G C T A T A C G G A T C C G T A A T C G T A C G A C G T C T A G A G T C C T A G A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCAGGTTAGC
--GGATTAGC
 A C T G A G T C C G T A A C T G A C T G A C G T A C G T C G T A A C T G A G T C
A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

Crx/MA0467.1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GCAGGTTAGC
AAGAGGATTAG-
 A C G T A C G T A C T G A G T C C G T A A C T G A C T G A C G T A C G T C G T A A C T G A G T C
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T