Information for 23-CACTTAAATCAAA (Motif 33)

A T G C G T C A G T A C A C G T A G C T C G T A G T C A C T G A A C G T A T G C C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T A T C G G T C A G A C T A C G T A C G T T C G A G T C A A C T G A C G T A T C G
p-value:1e-10
log p-value:-2.358e+01
Information Content per bp:1.804
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.74%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets39.0 +/- 27.6bp
Average Position of motif in Background35.0 +/- 21.7bp
Strand Bias (log2 ratio + to - strand density)1.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX3-2/MA0122.2/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CACTTAAATCAAA
ACCACTTAA------
 A C G T A C G T A T G C G T C A G T A C A C G T A G C T C G T A G T C A C T G A A C G T A T G C C G T A C G T A C G T A
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

ISL2/MA0914.1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CACTTAAATCAAA
GCACTTAA------
 A C G T A T G C G T C A G T A C A C G T A G C T C G T A G T C A C T G A A C G T A T G C C G T A C G T A C G T A
T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.61
Offset:5
Orientation:forward strand
Alignment:CACTTAAATCAAA--
-----ACATCAAAGG
 A T G C G T C A G T A C A C G T A G C T C G T A G T C A C T G A A C G T A T G C C G T A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

Nkx3-1/MA0124.2/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CACTTAAATCAAA
ACCACTTAA------
 A C G T A C G T A T G C G T C A G T A C A C G T A G C T C G T A G T C A C T G A A C G T A T G C C G T A C G T A C G T A
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:5
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CACTTAAATCAAA
---AAAAGTCAA-
 A T G C G T C A G T A C A C G T A G C T C G T A G T C A C T G A A C G T A T G C C G T A C G T A C G T A
A C G T A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:6
Score:0.60
Offset:5
Orientation:forward strand
Alignment:CACTTAAATCAAA----
-----ACATCAAAGGNA
 A T G C G T C A G T A C A C G T A G C T C G T A G T C A C T G A A C G T A T G C C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CACTTAAATCAAA
RSCACTYRAG-----
 A C G T A C G T A T G C G T C A G T A C A C G T A G C T C G T A G T C A C T G A A C G T A T G C C G T A C G T A C G T A
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T A C G T A C G T A C G T

PB0082.1_Tcf3_1/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CACTTAAATCAAA------
--TATAGATCAAAGGAAAA
 A T G C G T C A G T A C A C G T A G C T C G T A G T C A C T G A A C G T A T G C C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G C T A G C T A G C T A

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:9
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CACTTAAATCAAA--
-----ACWTCAAAGG
 A T G C G T C A G T A C A C G T A G C T C G T A G T C A C T G A A C G T A T G C C G T A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CACTTAAATCAAA
MRSCACTYAA------
 A C G T A C G T A C G T A T G C G T C A G T A C A C G T A G C T C G T A G T C A C T G A A C G T A T G C C G T A C G T A C G T A
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T A C G T A C G T A C G T