Information for 3-TTTGACWACA (Motif 3)

A C G T A C G T C A G T T C A G C T G A G T A C G C T A T G C A G T A C C G T A
Reverse Opposite:
C G A T C A T G A C G T C G A T C A T G A G C T A G T C G C T A G T C A C G T A
p-value:1e-28
log p-value:-6.482e+01
Information Content per bp:1.722
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.61%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets56.1 +/- 23.2bp
Average Position of motif in Background33.8 +/- 18.2bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS1/MA0498.2/Jaspar

Match Rank:1
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TTTGACWACA
-TTGACAG--
 A C G T A C G T C A G T T C A G C T G A G T A C G C T A T G C A G T A C C G T A
A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TTTGACWACA
-TTGACAGG-
 A C G T A C G T C A G T T C A G C T G A G T A C G C T A T G C A G T A C C G T A
A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TTTGACWACA
NNTTGGCANN-
 A C G T A C G T A C G T C A G T T C A G C T G A G T A C G C T A T G C A G T A C C G T A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T

PB0120.1_Foxj1_2/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TTTGACWACA----
ATGTCACAACAACAC
 A C G T A C G T A C G T C A G T T C A G C T G A G T A C G C T A T G C A G T A C C G T A A C G T A C G T A C G T A C G T
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TTTGACWACA
-YTGWCADY-
 A C G T A C G T C A G T T C A G C T G A G T A C G C T A T G C A G T A C C G T A
A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TTTGACWACA
-TTGACAGC-
 A C G T A C G T C A G T T C A G C T G A G T A C G C T A T G C A G T A C C G T A
A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TTTGACWACA
NTTGGCANN-
 A C G T A C G T C A G T T C A G C T G A G T A C G C T A T G C A G T A C C G T A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TTTGACWACA
NTTTTACGAC-
 A C G T A C G T A C G T C A G T T C A G C T G A G T A C G C T A T G C A G T A C C G T A
C G A T C G A T C G A T C G A T C G A T C G T A A G T C C T A G C G T A A G T C A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TTTGACWACA
CTTGGCAA--
 A C G T A C G T C A G T T C A G C T G A G T A C G C T A T G C A G T A C C G T A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

PB0129.1_Glis2_2/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TTTGACWACA--
TCTTTANTAATANN
 A C G T A C G T A C G T A C G T C A G T T C A G C T G A G T A C G C T A T G C A G T A C C G T A A C G T A C G T
A G C T A G T C C A G T G C A T C G A T C G T A C G A T G A C T G T C A C G T A G A C T T G C A G C A T C G A T