Information for 1-KGYWCYCTGGAGAMTK (Motif 17)

C A G T C T A G G A C T G C A T T G A C G A T C A G T C C G A T C A T G C A T G C G T A C A T G C G T A G T C A C G A T C A T G
Reverse Opposite:
G T A C G C T A C A G T C G A T G T A C G C A T G T A C G T A C G C T A T C A G C T A G A C T G C G T A C T G A G A T C G T C A
p-value:1e-16
log p-value:-3.821e+01
Information Content per bp:1.504
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.74%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets53.9 +/- 24.1bp
Average Position of motif in Background75.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

EBF1/MA0154.3/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:KGYWCYCTGGAGAMTK
-ANTCCCTNGGGAAT-
 C A G T C T A G G A C T G C A T T G A C G A T C A G T C C G A T C A T G C A T G C G T A C A T G C G T A G T C A C G A T C A T G
A C G T C T G A C A G T G A C T G T A C A G T C A G T C G C A T C G A T C T A G T C A G T A C G C T G A T G C A G A C T A C G T

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:2
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:KGYWCYCTGGAGAMTK
---TCCCNNGGGACN-
 C A G T C T A G G A C T G C A T T G A C G A T C A G T C C G A T C A T G C A T G C G T A C A T G C G T A G T C A C G A T C A T G
A C G T A C G T A C G T G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A T A G C G A T C A C G T

PB0158.1_Rfx3_2/Jaspar

Match Rank:3
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--KGYWCYCTGGAGAMTK-----
ACTGACCCTTGGTTACCACAAAG
 A C G T A C G T C A G T C T A G G A C T G C A T T G A C G A T C A G T C C G A T C A T G C A T G C G T A C A T G C G T A G T C A C G A T C A T G A C G T A C G T A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:KGYWCYCTGGAGAMTK
--TCCCCTGGGGAC--
 C A G T C T A G G A C T G C A T T G A C G A T C A G T C C G A T C A T G C A T G C G T A C A T G C G T A G T C A C G A T C A T G
A C G T A C G T A G C T A G T C A G T C G A T C G A T C C G A T C T A G C T A G C T A G T C A G T G C A G T A C A C G T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:5
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-KGYWCYCTGGAGAMTK
ATAACCACTTGAAAATT
 A C G T C A G T C T A G G A C T G C A T T G A C G A T C A G T C C G A T C A T G C A T G C G T A C A T G C G T A G T C A C G A T C A T G
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:6
Score:0.49
Offset:5
Orientation:forward strand
Alignment:KGYWCYCTGGAGAMTK-
-----CNTGTTTACATA
 C A G T C T A G G A C T G C A T T G A C G A T C A G T C C G A T C A T G C A T G C G T A C A T G C G T A G T C A C G A T C A T G A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A

PB0159.1_Rfx4_2/Jaspar

Match Rank:7
Score:0.49
Offset:2
Orientation:forward strand
Alignment:KGYWCYCTGGAGAMTK-
--TACCCTAGTTACCGA
 C A G T C T A G G A C T G C A T T G A C G A T C A G T C C G A T C A T G C A T G C G T A C A T G C G T A G T C A C G A T C A T G A C G T
A C G T A C G T G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:KGYWCYCTGGAGAMTK-------
---NNCCTGNAAAAAAAAAAAAA
 C A G T C T A G G A C T G C A T T G A C G A T C A G T C C G A T C A T G C A T G C G T A C A T G C G T A G T C A C G A T C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:9
Score:0.49
Offset:2
Orientation:forward strand
Alignment:KGYWCYCTGGAGAMTK---
--CTACTTGGATACGGAAT
 C A G T C T A G G A C T G C A T T G A C G A T C A G T C C G A T C A T G C A T G C G T A C A T G C G T A G T C A C G A T C A T G A C G T A C G T A C G T
A C G T A C G T A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:10
Score:0.48
Offset:0
Orientation:reverse strand
Alignment:KGYWCYCTGGAGAMTK
TGGACTTTGNNCTNTG
 C A G T C T A G G A C T G C A T T G A C G A T C A G T C C G A T C A T G C A T G C G T A C A T G C G T A G T C A C G A T C A T G
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G