Information for 3-AHTTTTAHTCAAHATT (Motif 3)

C G T A G C T A A C G T A C G T C G A T A G C T C G T A G C T A A C G T A T G C C G T A C T G A G C T A C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T C A G T A G C T A C G T A T C G C G T A C A G T A C G T C T G A C G T A C G T A G T C A C A G T C G A T
p-value:1e-8
log p-value:-1.883e+01
Information Content per bp:1.785
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif22.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets64.3 +/- 14.7bp
Average Position of motif in Background48.4 +/- 33.1bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0001.1_Arid3a_1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AHTTTTAHTCAAHATT-
GGGTTTAATTAAAATTC
 C G T A G C T A A C G T A C G T C G A T A G C T C G T A G C T A A C G T A T G C C G T A C T G A G C T A C G T A A C G T A C G T A C G T
T A C G A C T G A C T G G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A G T C A G A C T G C A T G A T C

Arid5a/MA0602.1/Jaspar

Match Rank:2
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:AHTTTTAHTCAAHATT--
----NNTNNCAATATTAG
 C G T A G C T A A C G T A C G T C G A T A G C T C G T A G C T A A C G T A T G C C G T A C T G A G C T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0002.1_Arid5a_1/Jaspar

Match Rank:3
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:AHTTTTAHTCAAHATT--
----NNTNNCAATATTAG
 C G T A G C T A A C G T A C G T C G A T A G C T C G T A G C T A A C G T A T G C C G T A C T G A G C T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PH0101.1_Lmx1b/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AHTTTTAHTCAAHATT
AGTTTTTAATTAATTTG
 A C G T C G T A G C T A A C G T A C G T C G A T A G C T C G T A G C T A A C G T A T G C C G T A C T G A G C T A C G T A A C G T A C G T
T C G A C T A G C G A T C G A T G C A T A G C T G A C T G C T A C G T A G C A T C G A T C G T A C T G A C G A T C G A T G A C T A C T G

PH0078.1_Hoxd13/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AHTTTTAHTCAAHATT
NNANTTTTATTGGNNN--
 A C G T A C G T C G T A G C T A A C G T A C G T C G A T A G C T C G T A G C T A A C G T A T G C C G T A C T G A G C T A C G T A A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G A C G T A C G T

PH0091.1_Lhx1/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AHTTTTAHTCAAHATT
NNTTATTAATTAATNCN
 A C G T C G T A G C T A A C G T A C G T C G A T A G C T C G T A G C T A A C G T A T G C C G T A C T G A G C T A C G T A A C G T A C G T
T G A C C T G A C G A T C G A T C G T A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G A C T G C A T A G T C A C T G

PB0005.1_Bbx_1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AHTTTTAHTCAAHATT
TAATTCAATGAAGTG-
 C G T A G C T A A C G T A C G T C G A T A G C T C G T A G C T A A C G T A T G C C G T A C T G A G C T A C G T A A C G T A C G T
G C A T G C T A C T G A C G A T C G A T T G A C G C T A C G T A C G A T A C T G C G T A G C T A A T C G G C A T C T A G A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---AHTTTTAHTCAAHATT
NTNAATTTTATTGNATT--
 A C G T A C G T A C G T C G T A G C T A A C G T A C G T C G A T A G C T C G T A G C T A A C G T A T G C C G T A C T G A G C T A C G T A A C G T A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T A C G T A C G T

PB0068.1_Sox1_1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AHTTTTAHTCAAHATT-
-AATCAATTCAATAATT
 C G T A G C T A A C G T A C G T C G A T A G C T C G T A G C T A A C G T A T G C C G T A C T G A G C T A C G T A A C G T A C G T A C G T
A C G T G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

Arid3b/MA0601.1/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AHTTTTAHTCAAHATT
-ATATTAATTAA----
 C G T A G C T A A C G T A C G T C G A T A G C T C G T A G C T A A C G T A T G C C G T A C T G A G C T A C G T A A C G T A C G T
A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A A C G T A C G T A C G T A C G T